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⊟PneumoWiki Streptococcus pneumoniae strains[edit | edit source]

NCBI Annotation old Annotation
Serotype Strain NCBI Accession total Genes NCBI Accession total Genes Reference
1 BVJ1JL NZ_CP071871 2210 CP071871 2238 Betts et al. [1]
gamPNI0373 NC_018630 2130 CP001845 2226 Williams et al. [2]
INV104 NC_017591 2198 FQ312030 1940 Donati et al. [3]
P1031 NC_012467 2187 CP000920 2254
SPN032672 NC_021003 2202 FQ312039 0 Donati et al. [3]
2 R6 NC_003098 2071 AE007317 2116 Hoskins et al. [4]
D39 NC_008533 2069 CP000410 2068 Lanie et al. [5]
D39V NZ_CP027540 2070 CP027540 2146 Slager et al. [6]
NCTC7466 NZ_LS483374 2068 LS483374 2066
3 A66 NZ_LN847353 2072 LN847353 2087
HU-OH NZ_AP018937 2124 AP018937 2084 Nagaoka et al. [7]
OXC141 NC_017592 2123 FQ312027 1986 Croucher et al. [8]
SPNA45 NC_018594 2246 HE983624 2083 Donati et al. [3]
SPN034156 NC_021006 2091 FQ312045 1956 Croucher et al. [8]
SPN034183 NC_021028 2119 FQ312043 1985 Croucher et al. [8]
SPN994038 NC_021026 2115 FQ312041 1974 Croucher et al. [8]
SPN994039 NC_021005 2115 FQ312044 1974 Croucher et al. [8]
4 NU83127 NZ_AP018936 2198 AP018936 2201 Nagaoka et al. [7]
TIGR4 NC_003028 2187 AE005672 2292 Tettelin et al. [9]
Xen35 NZ_CP025256 2188 CP025256 2322 Herbert et al. [10]
5 70585 NC_012468 2247 CP000918 2323
6A 6A-10 NZ_CP053210 2278 CP053210 2334 Obert et al. [11]
6B 670-6B NC_014498 2328 CP002176 2366 Donati et al. [3]
11A AP200 NC_014494 2187 CP002121 2284 Camilli et al. [12]
12F ASP0581 NZ_AP019192 2206 AP019192 2231 Chang et al. [13]
14 CGSP14 NC_010582 2223 CP001033 2276 Ding et al. [14]
INV200 NC_017593 2105 FQ312029 2049 Donati et al. [3]
JJA NC_012466 2169 CP000919 2235
19A Hungary19A-6 NC_010380 2302 CP000936 2402
Hu15 NZ_CP020551 2157 CP020551 2287 Rieger et al. [15]
Hu17 NZ_CP020549 2153 CP020549 2314 Rieger et al. [15]
SP49 NZ_CP018136 2285 CP018136 2276 Donner et al. [16]
TCH8431/19A NC_014251 2137 CP001993 2355 Muzny et al.
19F ATCC 49619 NZ_AP018938 2153 AP018938 2128 Nagaoka et al. [7]
A026 NC_022655 2124 CP006844 2153 Sui et al. [17]
EF3030 NZ_CP035897 2117 CP035897 2222 Junges et al. [18]
G54 NC_011072 2107 CP001015 2186 Dopazo et al. [19]
MDRSPN001 NZ_AP018391 2062 AP018391 2054 Sato et al. [20]
ST556 NC_017769 2203 CP003357 2304 Li et al. [21]
Taiwan19F-14 NC_012469 2153 CP000921 2205
23F ATCC 700669 NC_011900 2259 FM211187 2262 Croucher et al. [22]


⊟Streptococcus pneumoniae plasmids[edit | edit source]

NCBI Annotation old Annotation
Strain Plasmid NCBI Accession total Genes NCBI Accession total Genes Reference
D39 pDP1 NC_005022 3 AF047696 3 Oggioni et al. [23]
Hu15 pSpn_Hu15 NZ_CP020552 6 CP020552 8 Rieger et al. [15]
Hu17 pSpn_Hu17 NZ_CP020550 8 CP020550 10 Rieger et al. [15]


⊟References[edit | edit source]

  1. ↑ Modupeh Betts, Seth Jarvis, Aaron Jeffries, Andrea Gori, Chrispin Chaguza, Jacquline Msefula, Caroline M Weight, Brenda Kwambana-Adams, Neil French, Todd D Swarthout, Jeremy S Brown, Robert S Heyderman
    Erratum for Betts et al., "Complete Genome Sequence of Streptococcus pneumoniae Strain BVJ1JL, a Serotype 1 Carriage Isolate from Malawi".
    Microbiol Resour Announc: 2021, 10(42);e0098521
    [PubMed:34672715] [WorldCat.org] [DOI] (I p)
  2. ↑ Tiffany M Williams, Nicholas J Loman, Chinelo Ebruke, Daniel M Musher, Richard A Adegbola, Mark J Pallen, George M Weinstock, Martin Antonio
    Genome analysis of a highly virulent serotype 1 strain of Streptococcus pneumoniae from West Africa.
    PLoS One: 2012, 7(10);e26742
    [PubMed:23082106] [WorldCat.org] [DOI] (I p)
  3. ↑ 3.0 3.1 3.2 3.3 3.4 Claudio Donati, N Luisa Hiller, Hervé Tettelin, Alessandro Muzzi, Nicholas J Croucher, Samuel V Angiuoli, Marco Oggioni, Julie C Dunning Hotopp, Fen Z Hu, David R Riley, Antonello Covacci, Tim J Mitchell, Stephen D Bentley, Morgens Kilian, Garth D Ehrlich, Rino Rappuoli, E Richard Moxon, Vega Masignani
    Structure and dynamics of the pan-genome of Streptococcus pneumoniae and closely related species.
    Genome Biol: 2010, 11(10);R107
    [PubMed:21034474] [WorldCat.org] [DOI] (I p)
  4. ↑ J Hoskins, W E Alborn, J Arnold, L C Blaszczak, S Burgett, B S DeHoff, S T Estrem, L Fritz, D J Fu, W Fuller, C Geringer, R Gilmour, J S Glass, H Khoja, A R Kraft, R E Lagace, D J LeBlanc, L N Lee, E J Lefkowitz, J Lu, P Matsushima, S M McAhren, M McHenney, K McLeaster, C W Mundy, T I Nicas, F H Norris, M O'Gara, R B Peery, G T Robertson, P Rockey, P M Sun, M E Winkler, Y Yang, M Young-Bellido, G Zhao, C A Zook, R H Baltz, S R Jaskunas, P R Rosteck, P L Skatrud, J I Glass
    Genome of the bacterium Streptococcus pneumoniae strain R6.
    J Bacteriol: 2001, 183(19);5709-17
    [PubMed:11544234] [WorldCat.org] [DOI] (P p)
  5. ↑ Joel A Lanie, Wai-Leung Ng, Krystyna M Kazmierczak, Tiffany M Andrzejewski, Tanja M Davidsen, Kyle J Wayne, Hervé Tettelin, John I Glass, Malcolm E Winkler
    Genome sequence of Avery's virulent serotype 2 strain D39 of Streptococcus pneumoniae and comparison with that of unencapsulated laboratory strain R6.
    J Bacteriol: 2007, 189(1);38-51
    [PubMed:17041037] [WorldCat.org] [DOI] (P p)
  6. ↑ Jelle Slager, Rieza Aprianto, Jan-Willem Veening
    Deep genome annotation of the opportunistic human pathogen Streptococcus pneumoniae D39.
    Nucleic Acids Res: 2018, 46(19);9971-9989
    [PubMed:30107613] [WorldCat.org] [DOI] (I p)
  7. ↑ 7.0 7.1 7.2 Kentaro Nagaoka, Satoshi Konno, Kazunori Murase, Taisei Kikuchi, Yoshitomo Morinaga, Katsunori Yanagihara, Ichiro Nakagawa
    Complete Genome Sequences of Streptococcus pneumoniae Strains HU-OH (Serotype 3, Sequence Type 183 [ST183]), NU83127 (Serotype 4, ST246), and ATCC 49619 (Serotype 19F, ST1203).
    Microbiol Resour Announc: 2019, 8(9);
    [PubMed:30834385] [WorldCat.org] [DOI] (I e)
  8. ↑ 8.0 8.1 8.2 8.3 8.4 Nicholas J Croucher, Andrea M Mitchell, Katherine A Gould, Donald Inverarity, Lars Barquist, Theresa Feltwell, Maria C Fookes, Simon R Harris, Janina Dordel, Susannah J Salter, Sarah Browall, Helena Zemlickova, Julian Parkhill, Staffan Normark, Birgitta Henriques-Normark, Jason Hinds, Tim J Mitchell, Stephen D Bentley
    Dominant role of nucleotide substitution in the diversification of serotype 3 pneumococci over decades and during a single infection.
    PLoS Genet: 2013, 9(10);e1003868
    [PubMed:24130509] [WorldCat.org] [DOI] (I p)
  9. ↑ H Tettelin, K E Nelson, I T Paulsen, J A Eisen, T D Read, S Peterson, J Heidelberg, R T DeBoy, D H Haft, R J Dodson, A S Durkin, M Gwinn, J F Kolonay, W C Nelson, J D Peterson, L A Umayam, O White, S L Salzberg, M R Lewis, D Radune, E Holtzapple, H Khouri, A M Wolf, T R Utterback, C L Hansen, L A McDonald, T V Feldblyum, S Angiuoli, T Dickinson, E K Hickey, I E Holt, B J Loftus, F Yang, H O Smith, J C Venter, B A Dougherty, D A Morrison, S K Hollingshead, C M Fraser
    Complete genome sequence of a virulent isolate of Streptococcus pneumoniae.
    Science: 2001, 293(5529);498-506
    [PubMed:11463916] [WorldCat.org] [DOI] (P p)
  10. ↑ Jenny A Herbert, Andrea M Mitchell, Ryan Ritchie, Jiangtao Ma, Kirsty Ross-Hutchinson, Timothy J Mitchell
    Expression of the lux genes in Streptococcus pneumoniae modulates pilus expression and virulence.
    PLoS One: 2018, 13(1);e0189426
    [PubMed:29342160] [WorldCat.org] [DOI] (I e)
  11. ↑ Caroline Obert, Jack Sublett, Deepak Kaushal, Ernesto Hinojosa, Theresa Barton, Elaine I Tuomanen, Carlos J Orihuela
    Identification of a Candidate Streptococcus pneumoniae core genome and regions of diversity correlated with invasive pneumococcal disease.
    Infect Immun: 2006, 74(8);4766-77
    [PubMed:16861665] [WorldCat.org] [DOI] (P p)
  12. ↑ Romina Camilli, Raoul J P Bonnal, Maria Del Grosso, Michele Iacono, Giorgio Corti, Ermanno Rizzi, Magda Marchetti, Laura Mulas, Francesco Iannelli, Fabiana Superti, Marco R Oggioni, Gianluca De Bellis, Annalisa Pantosti
    Complete genome sequence of a serotype 11A, ST62 Streptococcus pneumoniae invasive isolate.
    BMC Microbiol: 2011, 11;25
    [PubMed:21284853] [WorldCat.org] [DOI] (I e)
  13. ↑ Bin Chang, Masatomo Morita, Ken-Ichi Lee, Makoto Ohnishi
    Complete Genome Sequence of a Sequence Type 4846 Streptococcus pneumoniae Serotype 12F Strain Isolated from a Meningitis Case in Japan.
    Microbiol Resour Announc: 2019, 8(11);
    [PubMed:30938327] [WorldCat.org] [DOI] (I e)
  14. ↑ Feng Ding, Petrus Tang, Mei-Hua Hsu, Peng Cui, Songnian Hu, Jun Yu, Cheng-Hsun Chiu
    Genome evolution driven by host adaptations results in a more virulent and antimicrobial-resistant Streptococcus pneumoniae serotype 14.
    BMC Genomics: 2009, 10;158
    [PubMed:19361343] [WorldCat.org] [DOI] (I e)
  15. ↑ 15.0 15.1 15.2 15.3 Martin Rieger, Dalia Denapaite, Reinhold Brückner, Patrick Maurer, Regine Hakenbeck
    Draft Genome Sequences of Two Streptococcus pneumoniae Serotype 19A Sequence Type 226 Clinical Isolates from Hungary, Hu17 with High-Level Beta-Lactam Resistance and Hu15 of a Penicillin-Sensitive Phenotype.
    Genome Announc: 2017, 5(20);
    [PubMed:28522729] [WorldCat.org] [DOI] (P e)
  16. ↑ Jannik Donner, Boyke Bunk, Isabel Schober, Cathrin Spröer, Simone Bergmann, Michael Jarek, Jörg Overmann, Irene Wagner-Döbler
    Complete Genome Sequences of Three Multidrug-Resistant Clinical Isolates of Streptococcus pneumoniae Serotype 19A with Different Susceptibilities to the Myxobacterial Metabolite Carolacton.
    Genome Announc: 2017, 5(7);
    [PubMed:28209832] [WorldCat.org] [DOI] (P e)
  17. ↑ Zhihai Sui, Wenqing Zhou, Kaihu Yao, Li Liu, Gang Zhang, Yonghong Yang, Jie Feng
    Complete Genome Sequence of Streptococcus pneumoniae Strain A026, a Clinical Multidrug-Resistant Isolate Carrying Tn2010.
    Genome Announc: 2013, 1(6);
    [PubMed:24336372] [WorldCat.org] [DOI] (P e)
  18. ↑ R Junges, M Maienschein-Cline, D A Morrison, F C Petersen
    Complete Genome Sequence of Streptococcus pneumoniae Serotype 19F Strain EF3030.
    Microbiol Resour Announc: 2019, 8(19);
    [PubMed:31072896] [WorldCat.org] [DOI] (I e)
  19. ↑ J Dopazo, A Mendoza, J Herrero, F Caldara, Y Humbert, L Friedli, M Guerrier, E Grand-Schenk, C Gandin, M de Francesco, A Polissi, G Buell, G Feger, E García, M Peitsch, J F García-Bustos
    Annotated draft genomic sequence from a Streptococcus pneumoniae type 19F clinical isolate.
    Microb Drug Resist: 2001, 7(2);99-125
    [PubMed:11442348] [WorldCat.org] [DOI] (P p)
  20. ↑ Toyotaka Sato, Yasuo Ohkoshi, Takayuki Wada, Yukari Fukushima, Hiromi Murabayashi, Yasunari Takakuwa, Kaoru Nishiyama, Tsukasa Shiraishi, Chie Nakajima, Yasuhiko Suzuki, Shin-Ichi Yokota
    Complete Genome Sequence of Multidrug-Resistant Streptococcus pneumoniae Serotype 19F Isolated from an Invasive Infection in Sapporo, Japan.
    Genome Announc: 2017, 5(44);
    [PubMed:29097473] [WorldCat.org] [DOI] (P e)
  21. ↑ Guiling Li, Fen Z Hu, Xianwei Yang, Yujun Cui, Jun Yang, Fen Qu, George F Gao, Jing-Ren Zhang
    Complete genome sequence of Streptococcus pneumoniae strain ST556, a multidrug-resistant isolate from an otitis media patient.
    J Bacteriol: 2012, 194(12);3294-5
    [PubMed:22628517] [WorldCat.org] [DOI] (I p)
  22. ↑ Nicholas J Croucher, Danielle Walker, Patricia Romero, Nicola Lennard, Gavin K Paterson, Nathalie C Bason, Andrea M Mitchell, Michael A Quail, Peter W Andrew, Julian Parkhill, Stephen D Bentley, Tim J Mitchell
    Role of conjugative elements in the evolution of the multidrug-resistant pandemic clone Streptococcus pneumoniaeSpain23F ST81.
    J Bacteriol: 2009, 191(5);1480-9
    [PubMed:19114491] [WorldCat.org] [DOI] (I p)
  23. ↑ M R Oggioni, F Iannelli, G Pozzi
    Characterization of cryptic plasmids pDP1 and pSMB1 of Streptococcus pneumoniae.
    Plasmid: 1999, 41(1);70-2
    [PubMed:9887308] [WorldCat.org] [DOI] (P p)
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