From PneumoWiki
Revision as of 17:12, 20 January 2022 by Robot (talk | contribs) (Created page with "<protect> <pneumodatabase>annotation</pneumodatabase> =Summary= *<pneumodatabase>organism</pneumodatabase> *<pneumodatabase>locus</pneumodatabase> *<pneumodatabase>pan locus...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 05-OCT-2017

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae MDRSPN001
  • locus tag: MDRSPN_00188 [new locus tag: MDRSPN_RS01020 ]
  • pan locus tag?: PNEUPAN000940000
  • symbol: MDRSPN_00188
  • pan gene symbol?: —
  • synonym:
  • product: GNAT family acetyltransferase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: MDRSPN_00188 [new locus tag: MDRSPN_RS01020 ]
  • symbol: MDRSPN_00188
  • product: GNAT family acetyltransferase
  • replicon: chromosome
  • strand: +
  • coordinates: 185940..186446
  • length: 507
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: AP018391 (185940..186446) NCBI
  • BioCyc:
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_0189 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    ATGGAATTACGCAGACCAAGATTAGCGGATAAGAAAGCTGTTTTAGATATGATGACAGAG
    TTTGAAAAGAGCCAATCAGCCCATGATGGAGGATTTTGGGATACAGAGAATTTTGTGTAT
    GAAGAGTGGTTGGAAAGCAATCAGGAACAGGAAATGGGGATTAATCTGCCTGAAGGATGG
    GTTCCTGCAATTCAGTTAGTGGCTTTTTCTGAGAAAGGTCAAGCAGTTGGATTTCTTAAT
    CTCCGGTTGCGCCTCAGTAACTTTCTACTAGAAGAAGGTGGGCACATTGGCTACTCCATC
    CGTCCATCTGAAAGAGGCAAGGGTTATGCAAAAGAGACTCTCCGTCAGGGCTTGCAAGTT
    GCTAAGGAAAAGAACATCAAGAAAGCTCTGGTGACCTGTAGCGTGAATAATCCTGCTAGC
    AGAGCAGTCATTCTAGCAAATGGTGGAATATTTGAGGATGCTCACAATGGAGTCGAGCGT
    TATTGGATAGAGGTAGCGAATGAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    507

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: MDRSPN_00188 [new locus tag: MDRSPN_RS01020 ]
  • symbol: MDRSPN_00188
  • description: GNAT family acetyltransferase
  • length: 168
  • theoretical pI: 5.10629
  • theoretical MW: 18969.3
  • GRAVY: -0.470238

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Protein synthesis Ribosomal proteins: synthesis and modification ribosomal-protein-alanine acetyltransferase (TIGR01575; EC 2.3.1.128; HMM-score: 13)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • ⊞PFAM:
    Acetyltrans (CL0257) Acetyltransf_3; Acetyltransferase (GNAT) domain (PF13302; HMM-score: 51)
    and 6 more
    Acetyltransf_1; Acetyltransferase (GNAT) family (PF00583; HMM-score: 34.6)
    Acetyltransf_7; Acetyltransferase (GNAT) domain (PF13508; HMM-score: 17.1)
    IHF-likeDNA-bdg (CL0548) HU-DNA_bdg; DNA-binding domain (PF14848; HMM-score: 16.2)
    Acetyltrans (CL0257) Acetyltransf_10; Acetyltransferase (GNAT) domain (PF13673; HMM-score: 14)
    Acetyltransf_CG; GCN5-related N-acetyl-transferase (PF14542; HMM-score: 13.8)
    Acetyltransf_9; Acetyltransferase (GNAT) domain (PF13527; HMM-score: 13)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.005603
    • TAT(Tat/SPI): 0.0002
    • LIPO(Sec/SPII): 0.000539
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: BBA58394 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MELRRPRLADKKAVLDMMTEFEKSQSAHDGGFWDTENFVYEEWLESNQEQEMGINLPEGWVPAIQLVAFSEKGQAVGFLNLRLRLSNFLLEEGGHIGYSIRPSERGKGYAKETLRQGLQVAKEKNIKKALVTCSVNNPASRAVILANGGIFEDAHNGVERYWIEVANE

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Expression data[edit | edit source]

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=MDRSPN_00188&oldid=107626"