From PneumoWiki
Revision as of 19:17, 20 January 2022 by Robot (talk | contribs) (Created page with "<protect> <pneumodatabase>annotation</pneumodatabase> =Summary= *<pneumodatabase>organism</pneumodatabase> *<pneumodatabase>locus</pneumodatabase> *<pneumodatabase>pan locus...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 03-AUG-2015

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae ST556
  • locus tag: MYY_0554 [new locus tag: MYY_RS02825 ]
  • pan locus tag?: PNEUPAN001365000
  • symbol: MYY_0554
  • pan gene symbol?: mtsB
  • synonym:
  • product: heme ABC transporter ATP-binding protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: MYY_0554 [new locus tag: MYY_RS02825 ]
  • symbol: MYY_0554
  • product: heme ABC transporter ATP-binding protein
  • replicon: chromosome
  • strand: +
  • coordinates: 528164..529846
  • length: 1683
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    ATGAAAGAAGCTATAATTGAGTGGAAGGATTTCTCTTTCCGGTATGAAACACAACAAGAA
    CCGACCTTGCAAGGGATAGACTTGACCATTTACAAGGGAGAGAAAGTCTTAATTGTTGGA
    CCATCTGGATCAGGTAAATCTACATTGGGTCAGTGTTTGAATGGGATTATTCCCAATATT
    TACAAGGGTCAGACATATGGAGAATTTTTGATAAAGGGTCAAGCAGCCTTTGATATGAGC
    ATCTATGATAAGTCTCATCTGGTTAGCACAGTTTTGCAGGATACAGATGGGCAGTTTATT
    GGCTTGTCTGTGGCAGAAGATTTGGCGTTTGCTCTGGAAAATGATGTGACAGCCCTAGAT
    GAGATGAAAGGTCGTGTTTATAAATGGGCTGAAAAGCTGGACCTTCTTCCTTTACTGGAT
    CAGCGTCCTCAGGATTTGTCAGGTGGACAAAAGCAGCGAGTCAGTCTGGCTGGTGTCTTG
    ATTGATGAAAGTCCGATTCTCTTGTTTGATGAGCCACTCGCCAATCTAGATCCCAAGTCA
    GGTCAGGATATTATCGAATTGATTGACCAGATTCATAAGGAAGAGGGGACGACGACTCTT
    ATTATCGAGCACCGTTTGGAGGACGTTCTGCATCGCCCTGTGGATCGGATTGTCTTGATA
    AACGATGGTCGTATCCTTTTTAATGGGAGCCCTGACCAGTTGCTTGCGACTGATTTATTG
    ACTCAAAATGGAATTCGAGAACCCCTTTATCTAACGACTCTCCGTCAATTAGGTGTGGAC
    TTAGTCAAGGAAGAACAATTAGCGAATCTGGATAACTTGTCTATCTCAAAAGGTCAGGTT
    CAGTTGCAGAATGAACTGGCAAAAGAAACCCCAGCATTGCAGTCACTCTTTAGACTAGAG
    GAAGTATCTTTTTCTTATGATGATAGACCGATTTTAAAATCCCTACATTTAGATATTAAA
    AAGGGTGAAAAGATTGCTATTGTCGGAAAAAATGGAGCAGGGAAATCAACTCTAGCCAAG
    GCTATAAGTAGCTTTATTCAGACGGAAGGACGCTATCTTTGGGAAAAACAGGATATAAAA
    GGCGATTCTGTTGCAGAGCGGGCGGAACGAGTAGGATATGTGCTACAAAATCCTAATCAA
    ATGATTTCAACCAATATGATTTTTGATGAGGTGGCTCTAGGGCTCCGTTTGCGAGGTGTG
    GATGAGAAGGAAATTGAAACGAGAGTATATGAAACCTTGAAAATCTGTGGACTTTATGAA
    TTCCGTAATTGGCCTATTTCTGCCCTGTCATTTGGTCAGAAAAAACGTGTCACCATTGCT
    TCAATTTTGGTCTTAGGAGCTGAAATTATTCTCCTAGATGAACCGACTGCAGGTCAAGAT
    CAGAAGAACTATACTGAGATTATGGAATTTCTCGAAGAGTTACATCAAAAAGGGCATACC
    ATTGTCATGATTACCCATGATATGCAATTGATGCTGGATTATTCAGACCGGGTCCTTGTC
    ATGGTGGATGGAGAATTGATTGCCGATACTGTTCCAGCCAGTCTGTTGAGCGATCCTGAG
    CTGTTAGTAAAAGCCAATCTAAAAGAAACCTCCATCTTTAACTTGGCTAAGAAACTAGAT
    GTGGATCCACTGGATTTAACGGCATTTTACAAAGAAAGGAGAGAGGGATGCAAGCTAAAT
    TAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1683

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: MYY_0554 [new locus tag: MYY_RS02825 ]
  • symbol: MYY_0554
  • description: heme ABC transporter ATP-binding protein
  • length: 560
  • theoretical pI: 4.57125
  • theoretical MW: 62844.6
  • GRAVY: -0.195179

⊟Function[edit | edit source]

  • ⊞TIGRFAM:
    Metabolism Transport and binding proteins Unknown substrate energy-coupling factor transporter ATPase (TIGR04520; EC 3.6.3.-; HMM-score: 392.5)
    Metabolism Transport and binding proteins Unknown substrate energy-coupling factor transporter ATPase (TIGR04521; EC 3.6.3.-; HMM-score: 343.6)
    and 102 more
    Metabolism Transport and binding proteins Cations and iron carrying compounds cobalt ABC transporter, ATP-binding protein (TIGR01166; HMM-score: 266.9)
    Cellular processes Cellular processes Pathogenesis type I secretion system ATPase (TIGR03375; HMM-score: 246.6)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking type I secretion system ATPase (TIGR03375; HMM-score: 246.6)
    Cellular processes Cellular processes Cell division cell division ATP-binding protein FtsE (TIGR02673; HMM-score: 236.6)
    Metabolism Transport and binding proteins Anions phosphonate ABC transporter, ATP-binding protein (TIGR02315; EC 3.6.3.28; HMM-score: 231.5)
    Metabolism Transport and binding proteins Anions sulfate ABC transporter, ATP-binding protein (TIGR00968; EC 3.6.3.25; HMM-score: 230.4)
    Cellular processes Cellular processes Toxin production and resistance putative bacteriocin export ABC transporter, lactococcin 972 group (TIGR03608; HMM-score: 230.1)
    Metabolism Transport and binding proteins Unknown substrate putative bacteriocin export ABC transporter, lactococcin 972 group (TIGR03608; HMM-score: 230.1)
    Metabolism Transport and binding proteins Anions phosphate ABC transporter, ATP-binding protein (TIGR00972; EC 3.6.3.27; HMM-score: 227.8)
    thiol reductant ABC exporter, CydD subunit (TIGR02857; HMM-score: 220)
    Metabolism Transport and binding proteins Amino acids, peptides and amines putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TIGR03265; HMM-score: 219.5)
    Metabolism Transport and binding proteins Amino acids, peptides and amines glycine betaine/L-proline transport ATP binding subunit (TIGR01186; HMM-score: 213.1)
    Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides LPS export ABC transporter ATP-binding protein (TIGR04406; HMM-score: 207.9)
    Metabolism Transport and binding proteins Other LPS export ABC transporter ATP-binding protein (TIGR04406; HMM-score: 207.9)
    2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT (TIGR03258; HMM-score: 205)
    Metabolism Transport and binding proteins Other thiamine ABC transporter, ATP-binding protein (TIGR01277; EC 3.6.3.-; HMM-score: 203.9)
    Metabolism Transport and binding proteins Amino acids, peptides and amines polyamine ABC transporter, ATP-binding protein (TIGR01187; EC 3.6.3.31; HMM-score: 202.1)
    Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides lipid A export permease/ATP-binding protein MsbA (TIGR02203; HMM-score: 197.8)
    Metabolism Transport and binding proteins Other lipid A export permease/ATP-binding protein MsbA (TIGR02203; HMM-score: 197.8)
    ABC exporter ATP-binding subunit, DevA family (TIGR02982; HMM-score: 197.2)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking lipoprotein releasing system, ATP-binding protein (TIGR02211; EC 3.6.3.-; HMM-score: 196.8)
    ABC transporter, permease/ATP-binding protein (TIGR02204; HMM-score: 196.5)
    Metabolism Transport and binding proteins Other daunorubicin resistance ABC transporter, ATP-binding protein (TIGR01188; HMM-score: 195.3)
    D-methionine ABC transporter, ATP-binding protein (TIGR02314; EC 3.6.3.-; HMM-score: 194.1)
    thiol reductant ABC exporter, CydC subunit (TIGR02868; HMM-score: 190.9)
    Metabolism Transport and binding proteins Amino acids, peptides and amines urea ABC transporter, ATP-binding protein UrtE (TIGR03410; HMM-score: 189)
    Metabolism Transport and binding proteins Anions molybdate ABC transporter, ATP-binding protein (TIGR02142; EC 3.6.3.29; HMM-score: 187.1)
    Metabolism Transport and binding proteins Cations and iron carrying compounds nickel import ATP-binding protein NikD (TIGR02770; HMM-score: 186.2)
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system (TIGR03864; HMM-score: 182.3)
    Metabolism Transport and binding proteins Cations and iron carrying compounds nickel import ATP-binding protein NikE (TIGR02769; EC 3.6.3.24; HMM-score: 182.1)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking type I secretion system ATPase (TIGR01846; HMM-score: 182)
    ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA (TIGR03005; HMM-score: 177.4)
    Metabolism Transport and binding proteins Amino acids, peptides and amines urea ABC transporter, ATP-binding protein UrtD (TIGR03411; HMM-score: 174)
    Metabolism Transport and binding proteins Amino acids, peptides and amines choline ABC transporter, ATP-binding protein (TIGR03415; HMM-score: 172.5)
    proposed F420-0 ABC transporter, ATP-binding protein (TIGR03873; HMM-score: 171.6)
    Cellular processes Cellular processes Biosynthesis of natural products NHLM bacteriocin system ABC transporter, ATP-binding protein (TIGR03797; HMM-score: 171.2)
    Metabolism Transport and binding proteins Amino acids, peptides and amines NHLM bacteriocin system ABC transporter, ATP-binding protein (TIGR03797; HMM-score: 171.2)
    Cellular processes Cellular processes Biosynthesis of natural products NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein (TIGR03796; HMM-score: 170.5)
    Metabolism Transport and binding proteins Amino acids, peptides and amines NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein (TIGR03796; HMM-score: 170.5)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking type I secretion system ATPase (TIGR01842; HMM-score: 165.9)
    Metabolism Transport and binding proteins Unknown substrate anchored repeat-type ABC transporter, ATP-binding subunit (TIGR03771; HMM-score: 164.4)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking ABC-type bacteriocin transporter (TIGR01193; HMM-score: 161.9)
    Genetic information processing Protein fate Protein modification and repair ABC-type bacteriocin transporter (TIGR01193; HMM-score: 161.9)
    Metabolism Transport and binding proteins Other ABC-type bacteriocin transporter (TIGR01193; HMM-score: 161.9)
    gliding motility-associated ABC transporter ATP-binding subunit GldA (TIGR03522; HMM-score: 158.4)
    Metabolism Transport and binding proteins Other antigen peptide transporter 2 (TIGR00958; HMM-score: 157.3)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking heme ABC exporter, ATP-binding protein CcmA (TIGR01189; EC 3.6.3.41; HMM-score: 156.3)
    Metabolism Transport and binding proteins Other heme ABC exporter, ATP-binding protein CcmA (TIGR01189; EC 3.6.3.41; HMM-score: 156.3)
    Metabolism Transport and binding proteins Other pigment precursor permease (TIGR00955; HMM-score: 153.6)
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids D-xylose ABC transporter, ATP-binding protein (TIGR02633; EC 3.6.3.17; HMM-score: 148.4)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Other FeS assembly ATPase SufC (TIGR01978; HMM-score: 147.9)
    phosphonate C-P lyase system protein PhnL (TIGR02324; HMM-score: 147)
    Metabolism Transport and binding proteins Anions nitrate ABC transporter, ATP-binding proteins C and D (TIGR01184; HMM-score: 145.5)
    Metabolism Transport and binding proteins Other nitrate ABC transporter, ATP-binding proteins C and D (TIGR01184; HMM-score: 145.5)
    lantibiotic protection ABC transporter, ATP-binding subunit (TIGR03740; HMM-score: 142.5)
    Cellular processes Cellular processes Other nodulation ABC transporter NodI (TIGR01288; HMM-score: 141.3)
    Metabolism Transport and binding proteins Other nodulation ABC transporter NodI (TIGR01288; HMM-score: 141.3)
    Metabolism Energy metabolism Methanogenesis methyl coenzyme M reductase system, component A2 (TIGR03269; HMM-score: 134.8)
    Metabolism Transport and binding proteins Amino acids, peptides and amines cyclic peptide transporter (TIGR01194; HMM-score: 123.2)
    Metabolism Transport and binding proteins Other cyclic peptide transporter (TIGR01194; HMM-score: 123.2)
    ATP-binding cassette protein, ChvD family (TIGR03719; HMM-score: 115)
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids glucan exporter ATP-binding protein (TIGR01192; EC 3.6.3.42; HMM-score: 102.4)
    Metabolism Transport and binding proteins Other multi drug resistance-associated protein (MRP) (TIGR00957; HMM-score: 100.8)
    Metabolism Transport and binding proteins Other rim ABC transporter (TIGR01257; HMM-score: 98.4)
    Metabolism Transport and binding proteins Other pleiotropic drug resistance family protein (TIGR00956; HMM-score: 88.5)
    Metabolism Central intermediary metabolism Phosphorus compounds phosphonate C-P lyase system protein PhnK (TIGR02323; HMM-score: 88.3)
    Genetic information processing DNA metabolism DNA replication, recombination, and repair excinuclease ABC subunit A (TIGR00630; EC 3.1.25.-; HMM-score: 71.3)
    Metabolism Transport and binding proteins Anions cystic fibrosis transmembrane conductor regulator (CFTR) (TIGR01271; EC 3.6.3.49; HMM-score: 66)
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids peroxysomal long chain fatty acyl transporter (TIGR00954; HMM-score: 50.3)
    P-type DNA transfer ATPase VirB11 (TIGR02788; HMM-score: 26.5)
    Unknown function General Mg chelatase-like protein (TIGR00368; HMM-score: 21.3)
    Unknown function General small GTP-binding protein domain (TIGR00231; HMM-score: 20.8)
    Metabolism Energy metabolism Amino acids and amines ethanolamine utilization protein, EutP (TIGR02528; HMM-score: 18)
    Metabolism Central intermediary metabolism Sulfur metabolism adenylyl-sulfate kinase (TIGR00455; EC 2.7.1.25; HMM-score: 17.9)
    Genetic information processing DNA metabolism DNA replication, recombination, and repair DNA replication and repair protein RecF (TIGR00611; HMM-score: 17)
    rad50 (TIGR00606; HMM-score: 16.9)
    Metabolism Central intermediary metabolism Phosphorus compounds phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN (TIGR02322; HMM-score: 16.8)
    Genetic information processing DNA metabolism DNA replication, recombination, and repair DNA repair protein RadA (TIGR00416; HMM-score: 16.5)
    KaiC domain protein, AF_0351 family (TIGR03880; HMM-score: 15.6)
    Metabolism Purines, pyrimidines, nucleosides, and nucleotides Nucleotide and nucleoside interconversions dTMP kinase (TIGR00041; EC 2.7.4.9; HMM-score: 15.4)
    Metabolism Purines, pyrimidines, nucleosides, and nucleotides Nucleotide and nucleoside interconversions cytidylate kinase (TIGR00017; EC 2.7.4.14; HMM-score: 15.3)
    Genetic information processing Protein synthesis Other ribosome-associated GTPase EngA (TIGR03594; HMM-score: 14.6)
    nicotinamide-nucleotide adenylyltransferase (TIGR01526; EC 2.7.7.1; HMM-score: 14.5)
    Genetic information processing DNA metabolism DNA replication, recombination, and repair DnaA regulatory inactivator Hda (TIGR03420; HMM-score: 13.8)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking type VII secretion protein EccCb (TIGR03925; HMM-score: 13.7)
    Metabolism Purines, pyrimidines, nucleosides, and nucleotides Salvage of nucleosides and nucleotides uridine kinase (TIGR00235; EC 2.7.1.48; HMM-score: 13.4)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Pantothenate and coenzyme A dephospho-CoA kinase (TIGR00152; EC 2.7.1.24; HMM-score: 13.3)
    Cellular processes Cellular processes Conjugation P-type conjugative transfer ATPase TrbB (TIGR02782; HMM-score: 13)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Molybdopterin molybdopterin-guanine dinucleotide biosynthesis protein B (TIGR00176; HMM-score: 12.8)
    type IV secretion/conjugal transfer ATPase, VirB4 family (TIGR00929; HMM-score: 12.2)
    polynucleotide kinase 3'-phosphatase (TIGR01663; EC 3.1.3.32; HMM-score: 12.2)
    Metabolism Purines, pyrimidines, nucleosides, and nucleotides Nucleotide and nucleoside interconversions guanylate kinase (TIGR03263; EC 2.7.4.8; HMM-score: 12.2)
    helicase/secretion neighborhood ATPase (TIGR03819; HMM-score: 12.2)
    carbohydrate kinase, thermoresistant glucokinase family (TIGR01313; EC 2.7.1.-; HMM-score: 11.9)
    Genetic information processing Protein fate Degradation of proteins, peptides, and glycopeptides putative ATP-dependent protease (TIGR00764; HMM-score: 11.8)
    cobaltochelatase subunit (TIGR02442; EC 6.6.1.2; HMM-score: 11.5)
    Genetic information processing DNA metabolism DNA replication, recombination, and repair orc1/cdc6 family replication initiation protein (TIGR02928; HMM-score: 11.5)
    putative cytidylate kinase (TIGR02173; EC 2.7.4.14; HMM-score: 11.2)
    Cellular processes Cellular processes Pathogenesis type III secretion apparatus H+-transporting two-sector ATPase (TIGR02546; EC 3.6.3.14; HMM-score: 10.5)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking type III secretion apparatus H+-transporting two-sector ATPase (TIGR02546; EC 3.6.3.14; HMM-score: 10.5)
    Metabolism Purines, pyrimidines, nucleosides, and nucleotides Nucleotide and nucleoside interconversions adenylate kinase (TIGR01351; EC 2.7.4.-; HMM-score: 9.9)
    Genetic information processing DNA metabolism DNA replication, recombination, and repair exonuclease SbcC (TIGR00618; HMM-score: 2.1)
  • ⊞TheSEED  :
    • Duplicated ATPase component MtsB of energizing module of methionine-regulated ECF transporter
    Amino Acids and Derivatives Lysine, threonine, methionine, and cysteine Methionine Biosynthesis  Duplicated ATPase component MtsB of energizing module of methionine-regulated ECF transporter
    and 1 more
    Membrane Transport Membrane Transport - no subcategory ECF class transporters  Duplicated ATPase component MtsB of energizing module of methionine-regulated ECF transporter
  • ⊞PFAM:
    P-loop_NTPase (CL0023) ABC_tran; ABC transporter (PF00005; HMM-score: 182.5)
    and 58 more
    AAA_21; AAA domain, putative AbiEii toxin, Type IV TA system (PF13304; HMM-score: 71.8)
    no clan defined DUF3744; ATP-binding cassette cobalt transporter (PF12558; HMM-score: 59)
    P-loop_NTPase (CL0023) SMC_N; RecF/RecN/SMC N terminal domain (PF02463; HMM-score: 50.9)
    AAA_29; P-loop containing region of AAA domain (PF13555; HMM-score: 39.1)
    AAA_16; AAA ATPase domain (PF13191; HMM-score: 32.2)
    AAA_18; AAA domain (PF13238; HMM-score: 31)
    AAA_23; AAA domain (PF13476; HMM-score: 30)
    Mg_chelatase; Magnesium chelatase, subunit ChlI (PF01078; HMM-score: 28.2)
    RsgA_GTPase; RsgA GTPase (PF03193; HMM-score: 27.1)
    AAA_25; AAA domain (PF13481; HMM-score: 26.2)
    AAA_24; AAA domain (PF13479; HMM-score: 26)
    AAA_22; AAA domain (PF13401; HMM-score: 25.6)
    AAA_15; AAA ATPase domain (PF13175; HMM-score: 24.9)
    MMR_HSR1; 50S ribosome-binding GTPase (PF01926; HMM-score: 23.9)
    ABC_ATPase; ATPase of the ABC class (PF09818; HMM-score: 23.5)
    AAA_5; AAA domain (dynein-related subfamily) (PF07728; HMM-score: 22.6)
    AAA; ATPase family associated with various cellular activities (AAA) (PF00004; HMM-score: 22.4)
    PduV-EutP; Ethanolamine utilisation - propanediol utilisation (PF10662; HMM-score: 21.7)
    AAA_33; AAA domain (PF13671; HMM-score: 21.6)
    ATP-synt_ab; ATP synthase alpha/beta family, nucleotide-binding domain (PF00006; HMM-score: 21.3)
    ATP_bind_1; Conserved hypothetical ATP binding protein (PF03029; HMM-score: 21.3)
    RNA_helicase; RNA helicase (PF00910; HMM-score: 21)
    Sigma54_activat; Sigma-54 interaction domain (PF00158; HMM-score: 20.6)
    AAA_13; AAA domain (PF13166; HMM-score: 20.3)
    KH (CL0007) KH_2; KH domain (PF07650; HMM-score: 20.2)
    P-loop_NTPase (CL0023) AAA_7; P-loop containing dynein motor region (PF12775; HMM-score: 20.1)
    AAA_28; AAA domain (PF13521; HMM-score: 19.2)
    NB-ARC; NB-ARC domain (PF00931; HMM-score: 19.1)
    AAA_30; AAA domain (PF13604; HMM-score: 18.6)
    SbcC_Walker_B; SbcC/RAD50-like, Walker B motif (PF13558; HMM-score: 18.2)
    APS_kinase; Adenylylsulphate kinase (PF01583; HMM-score: 17.7)
    NACHT; NACHT domain (PF05729; HMM-score: 17.4)
    Roc; Ras of Complex, Roc, domain of DAPkinase (PF08477; HMM-score: 17.4)
    AAA_27; AAA domain (PF13514; HMM-score: 16.8)
    NTPase_1; NTPase (PF03266; HMM-score: 16.6)
    FtsK_SpoIIIE; FtsK/SpoIIIE family (PF01580; HMM-score: 16.3)
    Cytidylate_kin; Cytidylate kinase (PF02224; HMM-score: 16.1)
    PRK; Phosphoribulokinase / Uridine kinase family (PF00485; HMM-score: 16)
    TsaE; Threonylcarbamoyl adenosine biosynthesis protein TsaE (PF02367; HMM-score: 15.8)
    G-alpha; G-protein alpha subunit (PF00503; HMM-score: 15.6)
    T2SSE; Type II/IV secretion system protein (PF00437; HMM-score: 14.8)
    IstB_IS21; IstB-like ATP binding protein (PF01695; HMM-score: 14.8)
    DUF815; Protein of unknown function (DUF815) (PF05673; HMM-score: 14.7)
    ATPase; KaiC (PF06745; HMM-score: 14.7)
    no clan defined DUF4388; Domain of unknown function (DUF4388) (PF14332; HMM-score: 14.6)
    P-loop_NTPase (CL0023) AAA_10; AAA-like domain (PF12846; HMM-score: 14.3)
    DUF87; Helicase HerA, central domain (PF01935; HMM-score: 14.2)
    AAA_14; AAA domain (PF13173; HMM-score: 14.2)
    Zeta_toxin; Zeta toxin (PF06414; HMM-score: 14)
    Sigma54_activ_2; Sigma-54 interaction domain (PF14532; HMM-score: 13.9)
    DUF5906; Family of unknown function (DUF5906) (PF19263; HMM-score: 13.9)
    bpMoxR; MoxR domain in the MoxR-vWA-beta-propeller ternary systems (PF20030; HMM-score: 13.3)
    MeaB; Methylmalonyl Co-A mutase-associated GTPase MeaB (PF03308; HMM-score: 12.4)
    DUF2813; Protein of unknown function (DUF2813) (PF11398; HMM-score: 11.9)
    CPT; Chloramphenicol phosphotransferase-like protein (PF07931; HMM-score: 11.8)
    TniB; Bacterial TniB protein (PF05621; HMM-score: 11.6)
    SRP54; SRP54-type protein, GTPase domain (PF00448; HMM-score: 10.8)
    DO-GTPase2; Double-GTPase 2 (PF19993; HMM-score: 9.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.04
    • Cytoplasmic Membrane Score: 9.96
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 0
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.074068
    • TAT(Tat/SPI): 0.000581
    • LIPO(Sec/SPII): 0.001123
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: AFC94215 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MKEAIIEWKDFSFRYETQQEPTLQGIDLTIYKGEKVLIVGPSGSGKSTLGQCLNGIIPNIYKGQTYGEFLIKGQAAFDMSIYDKSHLVSTVLQDTDGQFIGLSVAEDLAFALENDVTALDEMKGRVYKWAEKLDLLPLLDQRPQDLSGGQKQRVSLAGVLIDESPILLFDEPLANLDPKSGQDIIELIDQIHKEEGTTTLIIEHRLEDVLHRPVDRIVLINDGRILFNGSPDQLLATDLLTQNGIREPLYLTTLRQLGVDLVKEEQLANLDNLSISKGQVQLQNELAKETPALQSLFRLEEVSFSYDDRPILKSLHLDIKKGEKIAIVGKNGAGKSTLAKAISSFIQTEGRYLWEKQDIKGDSVAERAERVGYVLQNPNQMISTNMIFDEVALGLRLRGVDEKEIETRVYETLKICGLYEFRNWPISALSFGQKKRVTIASILVLGAEIILLDEPTAGQDQKNYTEIMEFLEELHQKGHTIVMITHDMQLMLDYSDRVLVMVDGELIADTVPASLLSDPELLVKANLKETSIFNLAKKLDVDPLDLTAFYKERREGCKLN

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Expression data[edit | edit source]

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=MYY_0554&oldid=160963"