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From PneumoWiki
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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 20-DEC-2020

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae OXC141
  • locus tag: SPNOXC_RS04520 [old locus tags: SPNOXC08340 SPNOXC_08340 ]
  • pan locus tag?: PNEUPAN001935000
  • symbol: SPNOXC_RS04520
  • pan gene symbol?: rluD1
  • synonym:
  • product: RluA family pseudouridine synthase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPNOXC_RS04520 [old locus tags: SPNOXC08340 SPNOXC_08340 ]
  • symbol: SPNOXC_RS04520
  • product: RluA family pseudouridine synthase
  • replicon: chromosome
  • strand: +
  • coordinates: 847956..848843
  • length: 888
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_017592 (847956..848843) NCBI
  • BioCyc: SPNOXC_RS04520 BioCyc
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_0820 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    ATGGAAATTAAAATTGAAACTGGTGGTCTGCGTTTGGATAAGGCTTTGTCAGATTTGTCA
    GAATTATCACGTAGTCTCGCGAATGAACAAATTAAATCAGGCCAGGTCTTGGTCAATGGT
    CAAGTCAAGAAAGCTAAATACACAGTCCAAGAGGGTGATGTCGTCACTTACCATGTGCCA
    GAACCAGAGGTATTAGAGTATGTGGCTGAGGATCTTCCGCTAGAAATAGTCTACCAAGAT
    GAGGATGTGGCTGTCGTTAACAAACCTCAGGGAATGGTTGTGCACCCGAGTGCTGGTCAT
    ACCAGTGGAACCCTAGTAAATGCCCTCATGTATCATATTAAGGACTTGTCGGGTATCAAT
    GGGGTTCTGCGTCCAGGGATTGTTCACCGTATTGATAAGGATACGTCAGGTCTTCTCATG
    ATTGCTAAAAACGATGATGCGCATCTAGCACTTGCCCAAGAACTCAAGGATAAAAAGTCT
    CTCCGCAAATATTGGGCGATTGTTCATGGAAATCTGCCTAATGATCGTGGTGTAATTGAA
    GCGCCGATTGGCCGGAGTGAAAAAGACCGTAAGAAACAGGCTGTAACTGCTAAAGGGAAG
    CCTGCAGTGACGCGTTTTCACGTCTTGGAACGCTTTGGCGATTATAGCTTAGTAGAGTTG
    CAACTGGAGACAGGGCGCACTCATCAAATCCGTGTCCACATGGCTTATATCGGCCATTCA
    GTCGCTGGTGATGAGGTCTATGGTCCTCGCAAGACTTTGAAAGGACATGGACAATTTCTT
    CATGCCAAGACTTTAGGTTTTACTCATCCGAGAACAGGTAAGACCTTGGAATTTAAAGCA
    GATATCCCAGAGATTTTTAAGGAAACCTTGGAGAGATTGAGAAAGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    888

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPNOXC_RS04520 [old locus tags: SPNOXC08340 SPNOXC_08340 ]
  • symbol: SPNOXC_RS04520
  • description: RluA family pseudouridine synthase
  • length: 295
  • theoretical pI: 9.3317
  • theoretical MW: 32840.4
  • GRAVY: -0.403729

⊟Function[edit | edit source]

  • ⊞⊞TIGRFAM:
    Genetic information processing Protein synthesis tRNA and rRNA base modification pseudouridine synthase, RluA family (TIGR00005; EC 5.4.99.-; HMM-score: 320.8)
    and 3 more
    Genetic information processing Protein synthesis tRNA and rRNA base modification pseudouridine synthase Rlu family protein, TIGR01621 (TIGR01621; EC 5.4.99.-; HMM-score: 102.8)
    Genetic information processing Protein synthesis tRNA and rRNA base modification pseudouridine synthase (TIGR00093; EC 5.4.99.-; HMM-score: 28.1)
    Metabolism Energy metabolism Photosynthesis photosystem II S4 domain protein (TIGR03069; HMM-score: 15)
  • TheSEED: see SPNOXC08340
  • ⊞⊞PFAM:
    PseudoU_synth (CL0649) PseudoU_synth_2; RNA pseudouridylate synthase (PF00849; HMM-score: 125.7)
    and 2 more
    S4 (CL0492) S4; S4 domain (PF01479; HMM-score: 41.1)
    S4_2; S4 domain (PF13275; HMM-score: 13.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • ⊞⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.007928
    • TAT(Tat/SPI): 0.001977
    • LIPO(Sec/SPII): 0.001034
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000403195 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MEIKIETGGLRLDKALSDLSELSRSLANEQIKSGQVLVNGQVKKAKYTVQEGDVVTYHVPEPEVLEYVAEDLPLEIVYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDDAHLALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTAKGKPAVTRFHVLERFGDYSLVELQLETGRTHQIRVHMAYIGHSVAGDEVYGPRKTLKGHGQFLHAKTLGFTHPRTGKTLEFKADIPEIFKETLERLRK

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SPNOXC_RS04520&oldid=118895"
Insert paragraph

NCBI: 20-DEC-2020

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae OXC141
  • locus tag: SPNOXC_RS04520 [old locus tags: SPNOXC08340 SPNOXC_08340 ]
  • pan locus tag?: PNEUPAN001935000
  • symbol: SPNOXC_RS04520
  • pan gene symbol?: rluD1
  • synonym:
  • product: RluA family pseudouridine synthase

Insert paragraph

⊟Genome View[edit | edit source]

Insert paragraph

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPNOXC_RS04520 [old locus tags: SPNOXC08340 SPNOXC_08340 ]
  • symbol: SPNOXC_RS04520
  • product: RluA family pseudouridine synthase
  • replicon: chromosome
  • strand: +
  • coordinates: 847956..848843
  • length: 888
  • essential: unknown

Insert paragraph

⊟Accession numbers[edit | edit source]

  • Location: NC_017592 (847956..848843) NCBI
  • BioCyc: SPNOXC_RS04520 BioCyc
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_0820 PneumoBrowse

Insert paragraph

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    ATGGAAATTAAAATTGAAACTGGTGGTCTGCGTTTGGATAAGGCTTTGTCAGATTTGTCA
    GAATTATCACGTAGTCTCGCGAATGAACAAATTAAATCAGGCCAGGTCTTGGTCAATGGT
    CAAGTCAAGAAAGCTAAATACACAGTCCAAGAGGGTGATGTCGTCACTTACCATGTGCCA
    GAACCAGAGGTATTAGAGTATGTGGCTGAGGATCTTCCGCTAGAAATAGTCTACCAAGAT
    GAGGATGTGGCTGTCGTTAACAAACCTCAGGGAATGGTTGTGCACCCGAGTGCTGGTCAT
    ACCAGTGGAACCCTAGTAAATGCCCTCATGTATCATATTAAGGACTTGTCGGGTATCAAT
    GGGGTTCTGCGTCCAGGGATTGTTCACCGTATTGATAAGGATACGTCAGGTCTTCTCATG
    ATTGCTAAAAACGATGATGCGCATCTAGCACTTGCCCAAGAACTCAAGGATAAAAAGTCT
    CTCCGCAAATATTGGGCGATTGTTCATGGAAATCTGCCTAATGATCGTGGTGTAATTGAA
    GCGCCGATTGGCCGGAGTGAAAAAGACCGTAAGAAACAGGCTGTAACTGCTAAAGGGAAG
    CCTGCAGTGACGCGTTTTCACGTCTTGGAACGCTTTGGCGATTATAGCTTAGTAGAGTTG
    CAACTGGAGACAGGGCGCACTCATCAAATCCGTGTCCACATGGCTTATATCGGCCATTCA
    GTCGCTGGTGATGAGGTCTATGGTCCTCGCAAGACTTTGAAAGGACATGGACAATTTCTT
    CATGCCAAGACTTTAGGTTTTACTCATCCGAGAACAGGTAAGACCTTGGAATTTAAAGCA
    GATATCCCAGAGATTTTTAAGGAAACCTTGGAGAGATTGAGAAAGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    888

Insert paragraph

This data comes from external databases and cannot be edited.

Insert paragraph

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPNOXC_RS04520 [old locus tags: SPNOXC08340 SPNOXC_08340 ]
  • symbol: SPNOXC_RS04520
  • description: RluA family pseudouridine synthase
  • length: 295
  • theoretical pI: 9.3317
  • theoretical MW: 32840.4
  • GRAVY: -0.403729

Insert paragraph

⊟Function[edit | edit source]

  • ⊞TIGRFAM:
    Genetic information processing Protein synthesis tRNA and rRNA base modification pseudouridine synthase, RluA family (TIGR00005; EC 5.4.99.-; HMM-score: 320.8)
    and 3 more
    Genetic information processing Protein synthesis tRNA and rRNA base modification pseudouridine synthase Rlu family protein, TIGR01621 (TIGR01621; EC 5.4.99.-; HMM-score: 102.8)
    Genetic information processing Protein synthesis tRNA and rRNA base modification pseudouridine synthase (TIGR00093; EC 5.4.99.-; HMM-score: 28.1)
    Metabolism Energy metabolism Photosynthesis photosystem II S4 domain protein (TIGR03069; HMM-score: 15)
  • TheSEED: see SPNOXC08340
  • ⊞PFAM:
    PseudoU_synth (CL0649) PseudoU_synth_2; RNA pseudouridylate synthase (PF00849; HMM-score: 125.7)
    and 2 more
    S4 (CL0492) S4; S4 domain (PF01479; HMM-score: 41.1)
    S4_2; S4 domain (PF13275; HMM-score: 13.6)

Insert paragraph

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Insert paragraph

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.007928
    • TAT(Tat/SPI): 0.001977
    • LIPO(Sec/SPII): 0.001034
  • predicted transmembrane helices (TMHMM): 0

Insert paragraph

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000403195 NCBI
  • UniProt:

Insert paragraph

⊟Protein sequence[edit | edit source]

  • MEIKIETGGLRLDKALSDLSELSRSLANEQIKSGQVLVNGQVKKAKYTVQEGDVVTYHVPEPEVLEYVAEDLPLEIVYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDDAHLALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTAKGKPAVTRFHVLERFGDYSLVELQLETGRTHQIRVHMAYIGHSVAGDEVYGPRKTLKGHGQFLHAKTLGFTHPRTGKTLEFKADIPEIFKETLERLRK

Insert paragraph

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

Insert paragraph

⊟Expression & Regulation[edit | edit source]

Insert paragraph

⊟Operon[edit | edit source]

Insert paragraph

⊟Regulation[edit | edit source]

  • regulator:

Insert paragraph

⊟Expression data[edit | edit source]

Insert paragraph

⊞Biological Material[edit | edit source]

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

⊞Other Information[edit | edit source]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

Insert paragraph

⊟Relevant publications[edit | edit source]

Insert paragraph