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From PneumoWiki
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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 26-OCT-2021

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⊟Summary[edit | edit source]

Contents

  • 1 Summary
  • 2 Genome View
  • 3 Gene
    • 3.1 General
    • 3.2 Accession numbers
    • 3.3 Phenotype
    • 3.4 DNA sequence
  • 4 Protein
    • 4.1 General
    • 4.2 Function
    • 4.3 Structure, modifications & cofactors
    • 4.4 Localization
    • 4.5 Accession numbers
    • 4.6 Protein sequence
    • 4.7 Experimental data
  • 5 Expression & Regulation
    • 5.1 Operon
    • 5.2 Regulation
    • 5.3 Expression data
  • 6 Biological Material
    • 6.1 Mutants
    • 6.2 Expression vector
    • 6.3 lacZ fusion
    • 6.4 GFP fusion
    • 6.5 two-hybrid system
    • 6.6 FLAG-tag construct
    • 6.7 Antibody
  • 7 Other Information
  • 8 Literature
    • 8.1 References
    • 8.2 Relevant publications
  • organism: Streptococcus pneumoniae R6
  • locus tag: SPR_RS10225 [old locus tag: spr2008 ]
  • pan locus tag?: PNEUPAN003915000
  • symbol: dnaB
  • pan gene symbol?: dnaC
  • synonym:
  • product: replicative DNA helicase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPR_RS10225 [old locus tag: spr2008 ]
  • symbol: dnaB
  • product: replicative DNA helicase
  • replicon: chromosome
  • strand: -
  • coordinates: 2000715..2002067
  • length: 1353
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_003098 (2000715..2002067) NCBI
  • BioCyc: see spr2008
  • MicrobesOnline: see spr2008
  • PneumoBrowse for strain D39V: SPV_2030 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    ATGGCAGAAGTAGAAGAGTTACGAGTACAACCTCAAGATATCTTAGCTGAGCAATCCGTT
    TTAGGGGCTATCTTTATTGATGAGAGTAAACTTGTTTTTGTGCGAGAATACATTGAGTCT
    CGGGACTTTTTTAAGTATGCCCATCGTTTGATTTTCCAAGCCATGGTCGATTTATCCGAT
    CGTGGTGATGCCATAGATGCAACAACGGTTCGTACTATCCTTGATAATCAAGGTGATTTA
    CAGAATATTGGTGGCTTGTCTTACTTGGTTGAGATTGTTAATTCTGTGCCAACTTCTGCT
    AATGCGGAGTATTATGCTAAGATTGTTGCAGAAAAAGCAATGCTACGTCGTTTAATTGCC
    AAGTTGACAGAGTCTGTCAACCAAGCTTACGAAGCGTCACAACCAGCTGATGAAATTATT
    GCTCAGGCAGAAAAAGGGTTGATTGATGTCAGTGAAAATGCAAATCGAAGCGGGTTTAAG
    AACATTCGAGATGTGTTGAATCTCAACTTTGGAAATCTGGAAGCTCGCTCGCAACAAACG
    ACCGATATTACAGGTATTGCGACAGGTTATCGTGATTTGGATCATATGACAACAGGACTT
    CATGAGGAGGAGTTGATTATCTTAGCAGCTCGTCCAGCAGTTGGTAAGACAGCATTTGCC
    TTGAATATCGCTCAGAATATTGGGACTAAGTTGGACAAAACGGTTGCTATTTTTTCACTC
    GAAATGGGTGCGGAAAGCTTGGTAGACCGTATGTTAGCTGCAGAAGGCTTGGTGGAGTCA
    CATTCTATCCGTACAGGGCAATTGACAGATGAGGAGTGGCAAAAATATACTATTGCTCAG
    GGTAATCTAGCTAACGCCAGTATCTATATCGATGATACGCCAGGTATTCGGATTACAGAG
    ATTCGTTCTCGTTCTCGTAAATTGGCTCAAGAAACTGGAAATCTTGGTTTGATTTTGATA
    GACTATTTGCAACTTATCACGGGAACTGGTCGAGAAAATCGTCAACAAGAAGTTTCTGAA
    ATTTCTCGTCAGTTGAAAATACTAGCCAAGGAATTGAAGGTTCCAGTAATCGCTCTGAGT
    CAGCTTTCTCGTGGTGTAGAACAACGTCAGGACAAGAGACCGGTCTTGTCTGATATTCGT
    GAATCTGGGTCTATTGAGCAGGACGCTGATATCGTAGCTTTTCTCTATCGCGATGACTAC
    TATGAACGTGGTGGTGAAGAAGAGGAGGGTATCCCAAATAATAAGGTGGAAGTTATTATC
    GAGAAAAACCGTAGTGGAGCTCGTGGAACAGTGGAATTGATTTTCCAAAAAGAATACAAT
    AAATTTTCAAGTATCTCAAAGAGGGAGGCATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1353

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPR_RS10225 [old locus tag: spr2008 ]
  • symbol: DnaB
  • description: replicative DNA helicase
  • length: 450
  • theoretical pI: 4.60373
  • theoretical MW: 50203.3
  • GRAVY: -0.307111

⊟Function[edit | edit source]

  • ⊞reaction:
    EC 3.6.4.12?  ExPASy
    DNA helicase ATP + H2O = ADP + phosphate
  • ⊞TIGRFAM:
    Genetic information processing DNA metabolism DNA replication, recombination, and repair replicative DNA helicase (TIGR00665; EC 3.6.4.12; HMM-score: 553.9)
    and 1 more
    Genetic information processing Mobile and extrachromosomal element functions Prophage functions phage replicative helicase, DnaB family (TIGR03600; HMM-score: 431.4)
  • TheSEED: see spr2008
  • ⊞PFAM:
    P-loop_NTPase (CL0023) DnaB_C; DnaB-like helicase C terminal domain (PF03796; HMM-score: 364.7)
    and 4 more
    no clan defined DnaB; DnaB-like helicase N terminal domain (PF00772; HMM-score: 108.6)
    P-loop_NTPase (CL0023) AAA_25; AAA domain (PF13481; HMM-score: 45.3)
    AAA; ATPase family associated with various cellular activities (AAA) (PF00004; HMM-score: 17.7)
    ATPase; KaiC (PF06745; HMM-score: 15.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 1.78
    • Cytoplasmic Membrane Score: 8.16
    • Cellwall Score: 0.06
    • Extracellular Score: 0.01
    • Internal Helices: 0
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.000746
    • TAT(Tat/SPI): 0.000305
    • LIPO(Sec/SPII): 0.000108
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000852486 NCBI
  • UniProt: see spr2008

⊟Protein sequence[edit | edit source]

  • MAEVEELRVQPQDILAEQSVLGAIFIDESKLVFVREYIESRDFFKYAHRLIFQAMVDLSDRGDAIDATTVRTILDNQGDLQNIGGLSYLVEIVNSVPTSANAEYYAKIVAEKAMLRRLIAKLTESVNQAYEASQPADEIIAQAEKGLIDVSENANRSGFKNIRDVLNLNFGNLEARSQQTTDITGIATGYRDLDHMTTGLHEEELIILAARPAVGKTAFALNIAQNIGTKLDKTVAIFSLEMGAESLVDRMLAAEGLVESHSIRTGQLTDEEWQKYTIAQGNLANASIYIDDTPGIRITEIRSRSRKLAQETGNLGLILIDYLQLITGTGRENRQQEVSEISRQLKILAKELKVPVIALSQLSRGVEQRQDKRPVLSDIRESGSIEQDADIVAFLYRDDYYERGGEEEEGIPNNKVEVIIEKNRSGARGTVELIFQKEYNKFSSISKREA

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

  • MicrobesOnline: SPR_RS10220 < dnaB < rplI < SPR_RS10235

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V: SPV_2030 PneumoExpress

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SPR_RS10225&oldid=128604"
  • This page was last edited on 20 January 2022, at 18:01.
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