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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 20-DEC-2020

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae OXC141
  • locus tag: SPNOXC_RS07275 [old locus tags: SPNOXC13480 SPNOXC_13480 ]
  • pan locus tag?: PNEUPAN002867000
  • symbol: SPNOXC_RS07275
  • pan gene symbol?: yugI
  • synonym:
  • product: S1 RNA-binding domain-containing protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPNOXC_RS07275 [old locus tags: SPNOXC13480 SPNOXC_13480 ]
  • symbol: SPNOXC_RS07275
  • product: S1 RNA-binding domain-containing protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1369998..1370357
  • length: 360
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_017592 (1369998..1370357) NCBI
  • BioCyc: SPNOXC_RS07275 BioCyc
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_1366 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    GTGAAAATCGGTGATAAGCTAAAGGGGCGTATTACAGGGATTCAGCCCTACGGTGCCTTT
    GTTGAGTTAGAGACGGGTGATACGGGGCTGATTCACATTTCAGAAATTCGGACAGGATTT
    ATTGAAAATATTCATGAAACCTTGAAAGTCGATGAAGAGGTTCAAGTTCAGGTAGTGGAT
    TTAGATGAATTTACGGGGAAAGCCAGTCTTTCTATCCGCACTTTGGAGGAAGAAAAGTAC
    CAGTTTCCTAGACGGAGACGCTTTTCAAGCGACCGCTTTAACTACGGTTTTGCTCCCTTT
    CGACGAATGCTACCAATCTGGACTGGAGAAGCCCTGCACCATTTAAAAAAGAAGAAGTAG
    60
    120
    180
    240
    300
    360

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPNOXC_RS07275 [old locus tags: SPNOXC13480 SPNOXC_13480 ]
  • symbol: SPNOXC_RS07275
  • description: S1 RNA-binding domain-containing protein
  • length: 119
  • theoretical pI: 9.51082
  • theoretical MW: 13851.8
  • GRAVY: -0.537815

⊟Function[edit | edit source]

  • ⊞TIGRFAM:
    Genetic information processing Transcription Degradation of RNA polyribonucleotide nucleotidyltransferase (TIGR03591; EC 2.7.7.8; HMM-score: 55.3)
    Genetic information processing Protein synthesis Ribosomal proteins: synthesis and modification ribosomal protein bS1 (TIGR00717; HMM-score: 51)
    and 4 more
    guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase (TIGR02696; EC 2.7.-.-,2.7.7.8; HMM-score: 31.9)
    Genetic information processing Transcription Degradation of RNA ribonuclease R (TIGR02063; EC 3.1.-.-; HMM-score: 26.6)
    Genetic information processing Transcription Degradation of RNA ribonuclease, Rne/Rng family (TIGR00757; EC 3.1.4.-; HMM-score: 14.3)
    Genetic information processing Transcription Degradation of RNA VacB and RNase II family 3'-5' exoribonucleases (TIGR00358; EC 3.1.13.1; HMM-score: 12.1)
  • TheSEED: see SPNOXC13480
  • ⊞PFAM:
    OB (CL0021) S1; S1 RNA binding domain (PF00575; HMM-score: 61.6)
    and 1 more
    S1_2; S1 domain (PF13509; HMM-score: 12.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002553
    • TAT(Tat/SPI): 0.000111
    • LIPO(Sec/SPII): 0.000337
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000689596 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MKIGDKLKGRITGIQPYGAFVELETGDTGLIHISEIRTGFIENIHETLKVDEEVQVQVVDLDEFTGKASLSIRTLEEEKYQFPRRRRFSSDRFNYGFAPFRRMLPIWTGEALHHLKKKK

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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