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From PneumoWiki
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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 06-SEP-2024

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⊟Summary[edit | edit source]

Contents

  • 1 Summary
  • 2 Genome View
  • 3 Gene
    • 3.1 General
    • 3.2 Accession numbers
    • 3.3 Phenotype
    • 3.4 DNA sequence
  • 4 Protein
    • 4.1 General
    • 4.2 Function
    • 4.3 Structure, modifications & cofactors
    • 4.4 Localization
    • 4.5 Accession numbers
    • 4.6 Protein sequence
    • 4.7 Experimental data
  • 5 Expression & Regulation
    • 5.1 Operon
    • 5.2 Regulation
    • 5.3 Expression data
  • 6 Biological Material
    • 6.1 Mutants
    • 6.2 Expression vector
    • 6.3 lacZ fusion
    • 6.4 GFP fusion
    • 6.5 two-hybrid system
    • 6.6 FLAG-tag construct
    • 6.7 Antibody
  • 7 Other Information
  • 8 Literature
    • 8.1 References
    • 8.2 Relevant publications
  • organism: Streptococcus pneumoniae D39V
  • locus tag: SPV_0311 [new locus tag: SPV_RS01700 ]
  • pan locus tag?: PNEUPAN001110000
  • symbol: dexB
  • pan gene symbol?: dexB
  • synonym:
  • product: Glucan 1,6-alpha-glucosidase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPV_0311 [new locus tag: SPV_RS01700 ]
  • symbol: dexB
  • product: Glucan 1,6-alpha-glucosidase
  • replicon: chromosome
  • strand: +
  • coordinates: 311173..312780
  • length: 1608
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: CP027540 (311173..312780) NCBI
  • BioCyc: SPV_0311 BioCyc
  • MicrobesOnline:
  • PneumoBrowse: SPV_0311 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    ATGCAAGAAAAATGGTGGCATAATGCCGTAGTCTATCAAGTCTATCCAAAGAGTTTTATG
    GATAGTAATGAAGATGGAGTTGGTGATTTGCCAGGAATTACCAGTAAGTTGGACTATCTA
    GCCAAGCTAGGAATCACAGCAATTTGGCTTTCTCCCGTTTATGACAGCCCTATGGATGAT
    AATGGCTATGATATTGCTGATTATCAAGCGATTGCGGCTATTTTTGGAACCATGGAGGAC
    ATGGATCAGCTGATTGCAGAAGCTAAGAAGCGTGATATCCGTATCATCATGGACTTGGTG
    GTCAATCATACCTCGGATGAGCATGCCTGGTTTGTAGAGGCCTGTGAAAATCCTAATAGC
    CCTGAGCGAGACTACTATATCTGGCGGGATGAGCCTAACGATTTAGATTCTATTTTTAGT
    GGATCTGCTTGGGAATACGATGAAAAATCTGGTCAATACTATCTCCACTTTTTCAGCAAG
    AAACAGCCGGATCTCAATTGGGAAAATGAAAAACTTCGCCAGAAAATTTATGAGATGATG
    GACTTCTGGATTGATAAAGGTATTGGTGGTTTCCGTATGGATGTTATTGACATGATTGGC
    AAAATTCCTGACGAGAAGGTAGTCAATAATGGTCCTATGCTCCATCCCTATCTCAAGGAA
    ATGAATCAGGCGACCTTTGGAGATAAGGATCTCTTGACAGTAGGGGAGACTTGGGGAGCA
    ACGCCAGAGATTGCCAAGCTCTACTCTGATCCAAAGGGGCAAGAATTGTCTATGGTCTTC
    CAGTTTGAACATATCGGTCTTCAGTATCAGGAAGGTCAGCCTAAATGGCACTATCAAAAA
    GAGCTGAATATCGCTAAGTTAAAAGAAATCTTCAACAAATGGCAGACAGAGTTAGGAGTT
    GAGGACGGTTGGAATTCCCTCTTCTGGAACAATCATGACCTCCCTCGTATTGTCTCAATC
    TGGGGAAATGACCAAGAATACCGCGAAAAATCTGCCAAAGCCTTTGCAATCTTGCTTCAT
    CTTATGAGAGGAACTCCTTATATCTACCAAGGTGAGGAGATTGGGATGACCAACTATCCG
    TTTGAAACACTGGATCAAGTAGAAGATATTGAATCTCTCAACTATGCGCGTGAGGCTCTT
    GAAAAAGGTGTTCCGATTGAAGAAATCATGGACAGTATCCGTGTTATTGGACGTGACAAT
    GCCCGTACCCCTATGCAATGGGACGAGAGCAAAAACGCTGGTTTCTCAACAGGTCAACCT
    TGGTTGGCGGTTAATCCAAATTACGAGATGATCAACGTCCAAGAAGCGCTGGCAAATCCA
    GATTCTATTTTCTATACCTATCAGAAACTGGTCCAAATTCGCAAGGAGAATAGCTGGCTA
    ATTCGAGCTGACTTTGAATTGCTTGATACGGCTGATAAGGTCTTTGCTTATATACGTAAG
    GATGGCGACCGTCGCTTCCTAGTTGTGGCTAACTTGTCCAATGAAGAGCAAGACTTGACA
    GTAGAAGGAAACGTCAAATCTGTCTTGATTGAAAACACCCTAGCTCAAGAAGTCTTTGAA
    AAACAAATCTTAGTTCCATGGGATGCTTTCTGTGTGGAATTACTATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1608

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPV_0311 [new locus tag: SPV_RS01700 ]
  • symbol: DexB
  • description: Glucan 1,6-alpha-glucosidase
  • length: 535
  • theoretical pI: 4.28333
  • theoretical MW: 62186.6
  • GRAVY: -0.499439

⊟Function[edit | edit source]

  • ⊞reaction:
    EC 3.2.1.70?  ExPASy
    Glucan 1,6-alpha-glucosidase Hydrolysis of (1->6)-alpha-D-glucosidic linkages in (1->6)-alpha-D-glucans and derived oligosaccharides
  • ⊞TIGRFAM:
    alpha,alpha-phosphotrehalase (TIGR02403; EC 3.2.1.93; HMM-score: 654.3)
    and 8 more
    Metabolism Energy metabolism Biosynthesis and degradation of polysaccharides trehalose synthase (TIGR02456; EC 5.4.99.16; HMM-score: 329.7)
    Metabolism Energy metabolism Biosynthesis and degradation of polysaccharides malto-oligosyltrehalose synthase (TIGR02401; EC 5.4.99.15; HMM-score: 53.1)
    Metabolism Energy metabolism Biosynthesis and degradation of polysaccharides malto-oligosyltrehalose trehalohydrolase (TIGR02402; EC 3.2.1.141; HMM-score: 51.3)
    pullulanase, type I (TIGR02104; EC 3.2.1.41; HMM-score: 32.2)
    Metabolism Energy metabolism Biosynthesis and degradation of polysaccharides 1,4-alpha-glucan branching enzyme (TIGR01515; EC 2.4.1.18; HMM-score: 30.5)
    Metabolism Energy metabolism Biosynthesis and degradation of polysaccharides glycogen debranching enzyme GlgX (TIGR02100; EC 3.2.1.-; HMM-score: 25)
    pullulanase, extracellular (TIGR02102; HMM-score: 16.7)
    Metabolism Energy metabolism Biosynthesis and degradation of polysaccharides glycogen debranching enzyme (TIGR01531; HMM-score: 11.2)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • ⊞PFAM:
    Glyco_hydro_tim (CL0058) Alpha-amylase; Alpha amylase, catalytic domain (PF00128; HMM-score: 421.4)
    and 6 more
    GHD (CL0369) Malt_amylase_C; Maltogenic Amylase, C-terminal domain (PF16657; HMM-score: 32.5)
    Glyco_hydro_tim (CL0058) hDGE_amylase; Glycogen debranching enzyme, glucanotransferase domain (PF14701; HMM-score: 19.2)
    GHD (CL0369) Alpha-amylase_C; Alpha amylase, C-terminal all-beta domain (PF02806; HMM-score: 16.8)
    DUF3459; Domain of unknown function (DUF3459) (PF11941; HMM-score: 16.8)
    Cyc-maltodext_C; Cyclo-malto-dextrinase C-terminal domain (PF10438; HMM-score: 13.3)
    Glyco_hydro_42C; Beta-galactosidase C-terminal domain (PF08533; HMM-score: 12.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • ⊞DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9968
    • Cytoplasmic Membrane Score: 0.0003
    • Cell wall & surface Score: 0.0001
    • Extracellular Score: 0.0028
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.007274
    • TAT(Tat/SPI): 0.000198
    • LIPO(Sec/SPII): 0.000891
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: AVN85484 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MQEKWWHNAVVYQVYPKSFMDSNEDGVGDLPGITSKLDYLAKLGITAIWLSPVYDSPMDDNGYDIADYQAIAAIFGTMEDMDQLIAEAKKRDIRIIMDLVVNHTSDEHAWFVEACENPNSPERDYYIWRDEPNDLDSIFSGSAWEYDEKSGQYYLHFFSKKQPDLNWENEKLRQKIYEMMDFWIDKGIGGFRMDVIDMIGKIPDEKVVNNGPMLHPYLKEMNQATFGDKDLLTVGETWGATPEIAKLYSDPKGQELSMVFQFEHIGLQYQEGQPKWHYQKELNIAKLKEIFNKWQTELGVEDGWNSLFWNNHDLPRIVSIWGNDQEYREKSAKAFAILLHLMRGTPYIYQGEEIGMTNYPFETLDQVEDIESLNYAREALEKGVPIEEIMDSIRVIGRDNARTPMQWDESKNAGFSTGQPWLAVNPNYEMINVQEALANPDSIFYTYQKLVQIRKENSWLIRADFELLDTADKVFAYIRKDGDRRFLVVANLSNEEQDLTVEGNVKSVLIENTLAQEVFEKQILVPWDAFCVELL

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • data available for TIGR4

⊟Expression data[edit | edit source]

  • PneumoExpress: SPV_0311 PneumoExpress

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SPV_0311&oldid=69075"
  • This page was last edited on 20 January 2022, at 15:42.
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