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From PneumoWiki
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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 17-JAN-2018

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae AP200
  • locus tag: SPAP_0092 [new locus tag: SPAP_RS00460 ]
  • pan locus tag?: PNEUPAN000687000
  • symbol: SPAP_0092
  • pan gene symbol?: comB
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPAP_0092 [new locus tag: SPAP_RS00460 ]
  • symbol: SPAP_0092
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 77944..79293
  • length: 1350
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    ATGAAACCAGAATTTTTAGAAAGTGCGGAGTTTTATAATCGTCGTTACCATAATTTTTCC
    AGTAGTGTGATTGTACCCATGGCCCTTCTGCTCGTGTTTTTACTTGGCTTTGCAACTGTT
    GCAGAAAAGGAGATGAGCTTGTCCACTAGAGCTACTGTCGAACCTAGTCGTATCCTTGCA
    AATATCCAGTCAACTAGCAACAATCGTATTCTTGTCAATCATTTGGAAGAAAATAAGCTG
    GTTAAGAAGGGGGATCTTTTGGTTCAATACCAAGAAGGGGCAGAGGGTGTCCAAGCGGAG
    TCCTATGCCAGTCAGTTGGACATGCTAAAGGATCAAAAAAAGCAATTGGAGTATCTGCAA
    AAGAGCCTGCAAGAAGGGGAGAACCACTTTCCAGAGGAGGATAAGTTTGGCTACCAAGCC
    ACCTTTCGCGACTACATCAGTCAAGCAGGCAGTCTTAGGGCTAGTACATCGCAACAAAAT
    GAGACCATCGCGTCCCAGAATGCAGCAGCTAGCCAAACCCAAGCCGAAATCGGCAACCTC
    ATCAATCAAACAGAGGCTAAAATTCGCGATTACCAGACAGCTAAGTCAGCTATGGAAACA
    GGTGCTTCCTTGGCCAGTCAGAATCTAGCCTACTCTCTTTACCAGTCCTACAAGTCTCAG
    GGCGAGGAAAATCCCCAAACTAAGGTTCAGGCAGTTGCACAGGTTGAAGCACAGATTTCT
    CAGTTAGAATCTAGTCTTGCTACTTACCGTGTCCAGTATGCAGGTTCAGGTACCCAGCAA
    GCCTATGCGTCAGGGTTAAGCAGTCAATTGGAATCCCTTAAATCCCAACACTTGGCAAAG
    GTTGGTCAGGAATTGACCCTTCTAGCCCAGAAAATCTTGGAGGCAGAGTCAGGTAAGAAG
    GTACAGGGAAATCTTTTAGACAAGGGGAAAATTACGGCAAGTGAGGATGGGGTGCTTCAT
    CTTAATCCTGAGACCAGTGATTCTAGCATGGTTGCAGAAGGTGCCCTACTAGCCCAACTT
    TATCCATCTTTGGAAAGAGAAGGGAAAGCCAAACTCACAGCCTATCTAAGTTCAAAAGAT
    GTAGCAAGAATCAAGGTCGGTGATTCTGTTCGCTATACTACGACTCATGATGCCGGGAAT
    CAACTTTTTCTAGATTCTACTATTACAAGTATTGATGCGACAGCTACTAAGACTGAGAAA
    GGGAATTTCTTTAAAATCGAGGCGGAGACTAATCTAACTTCGGAGCAGGCTGAAAAACTT
    AGGTACGGGGTGGAAGGCCGTCTACAGATGATTACGGGCAAGAAAAGTTACCTACGTTAT
    TATTTGGATCAATTTTTGAACAAAGAGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1350

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPAP_0092 [new locus tag: SPAP_RS00460 ]
  • symbol: SPAP_0092
  • description: hypothetical protein
  • length: 449
  • theoretical pI: 5.39064
  • theoretical MW: 49642.1
  • GRAVY: -0.512472

⊟Function[edit | edit source]

  • ⊞⊞TIGRFAM:
    Metabolism Transport and binding proteins Other bacteriocin secretion accessory protein (TIGR01000; HMM-score: 571.3)
    and 4 more
    Genetic information processing Protein fate Protein and peptide secretion and trafficking type I secretion membrane fusion protein, HlyD family (TIGR01843; HMM-score: 59.8)
    Cellular processes Cellular processes Biosynthesis of natural products NHLM bacteriocin system secretion protein (TIGR03794; HMM-score: 25.7)
    Metabolism Transport and binding proteins Amino acids, peptides and amines NHLM bacteriocin system secretion protein (TIGR03794; HMM-score: 25.7)
    type III secretion protein HrpB7 (TIGR02559; HMM-score: 8.9)
  • TheSEED  :
    • Competence-stimulating peptide ABC transporter permease protein ComB
    DNA Metabolism DNA uptake, competence Competence in Streptococci  Competence-stimulating peptide ABC transporter permease protein ComB
  • PFAM:
    Hybrid (CL0105) Biotin_lipoyl_2; Biotin-lipoyl like (PF13533; HMM-score: 11.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞⊞PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.17
    • Cytoplasmic Membrane Score: 9.51
    • Cellwall Score: 0.16
    • Extracellular Score: 0.15
    • Internal Helix: 1
  • ⊞⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.327369
    • TAT(Tat/SPI): 0.02041
    • LIPO(Sec/SPII): 0.026821
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: ADM83686 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MKPEFLESAEFYNRRYHNFSSSVIVPMALLLVFLLGFATVAEKEMSLSTRATVEPSRILANIQSTSNNRILVNHLEENKLVKKGDLLVQYQEGAEGVQAESYASQLDMLKDQKKQLEYLQKSLQEGENHFPEEDKFGYQATFRDYISQAGSLRASTSQQNETIASQNAAASQTQAEIGNLINQTEAKIRDYQTAKSAMETGASLASQNLAYSLYQSYKSQGEENPQTKVQAVAQVEAQISQLESSLATYRVQYAGSGTQQAYASGLSSQLESLKSQHLAKVGQELTLLAQKILEAESGKKVQGNLLDKGKITASEDGVLHLNPETSDSSMVAEGALLAQLYPSLEREGKAKLTAYLSSKDVARIKVGDSVRYTTTHDAGNQLFLDSTITSIDATATKTEKGNFFKIEAETNLTSEQAEKLRYGVEGRLQMITGKKSYLRYYLDQFLNKE

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Expression data[edit | edit source]

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SPAP_0092&oldid=42286"
Insert paragraph

NCBI: 17-JAN-2018

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae AP200
  • locus tag: SPAP_0092 [new locus tag: SPAP_RS00460 ]
  • pan locus tag?: PNEUPAN000687000
  • symbol: SPAP_0092
  • pan gene symbol?: comB
  • synonym:
  • product: hypothetical protein

Insert paragraph

⊟Genome View[edit | edit source]

Insert paragraph

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPAP_0092 [new locus tag: SPAP_RS00460 ]
  • symbol: SPAP_0092
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 77944..79293
  • length: 1350
  • essential: unknown

Insert paragraph

⊟Accession numbers[edit | edit source]

Insert paragraph

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    ATGAAACCAGAATTTTTAGAAAGTGCGGAGTTTTATAATCGTCGTTACCATAATTTTTCC
    AGTAGTGTGATTGTACCCATGGCCCTTCTGCTCGTGTTTTTACTTGGCTTTGCAACTGTT
    GCAGAAAAGGAGATGAGCTTGTCCACTAGAGCTACTGTCGAACCTAGTCGTATCCTTGCA
    AATATCCAGTCAACTAGCAACAATCGTATTCTTGTCAATCATTTGGAAGAAAATAAGCTG
    GTTAAGAAGGGGGATCTTTTGGTTCAATACCAAGAAGGGGCAGAGGGTGTCCAAGCGGAG
    TCCTATGCCAGTCAGTTGGACATGCTAAAGGATCAAAAAAAGCAATTGGAGTATCTGCAA
    AAGAGCCTGCAAGAAGGGGAGAACCACTTTCCAGAGGAGGATAAGTTTGGCTACCAAGCC
    ACCTTTCGCGACTACATCAGTCAAGCAGGCAGTCTTAGGGCTAGTACATCGCAACAAAAT
    GAGACCATCGCGTCCCAGAATGCAGCAGCTAGCCAAACCCAAGCCGAAATCGGCAACCTC
    ATCAATCAAACAGAGGCTAAAATTCGCGATTACCAGACAGCTAAGTCAGCTATGGAAACA
    GGTGCTTCCTTGGCCAGTCAGAATCTAGCCTACTCTCTTTACCAGTCCTACAAGTCTCAG
    GGCGAGGAAAATCCCCAAACTAAGGTTCAGGCAGTTGCACAGGTTGAAGCACAGATTTCT
    CAGTTAGAATCTAGTCTTGCTACTTACCGTGTCCAGTATGCAGGTTCAGGTACCCAGCAA
    GCCTATGCGTCAGGGTTAAGCAGTCAATTGGAATCCCTTAAATCCCAACACTTGGCAAAG
    GTTGGTCAGGAATTGACCCTTCTAGCCCAGAAAATCTTGGAGGCAGAGTCAGGTAAGAAG
    GTACAGGGAAATCTTTTAGACAAGGGGAAAATTACGGCAAGTGAGGATGGGGTGCTTCAT
    CTTAATCCTGAGACCAGTGATTCTAGCATGGTTGCAGAAGGTGCCCTACTAGCCCAACTT
    TATCCATCTTTGGAAAGAGAAGGGAAAGCCAAACTCACAGCCTATCTAAGTTCAAAAGAT
    GTAGCAAGAATCAAGGTCGGTGATTCTGTTCGCTATACTACGACTCATGATGCCGGGAAT
    CAACTTTTTCTAGATTCTACTATTACAAGTATTGATGCGACAGCTACTAAGACTGAGAAA
    GGGAATTTCTTTAAAATCGAGGCGGAGACTAATCTAACTTCGGAGCAGGCTGAAAAACTT
    AGGTACGGGGTGGAAGGCCGTCTACAGATGATTACGGGCAAGAAAAGTTACCTACGTTAT
    TATTTGGATCAATTTTTGAACAAAGAGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1350

Insert paragraph

This data comes from external databases and cannot be edited.

Insert paragraph

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPAP_0092 [new locus tag: SPAP_RS00460 ]
  • symbol: SPAP_0092
  • description: hypothetical protein
  • length: 449
  • theoretical pI: 5.39064
  • theoretical MW: 49642.1
  • GRAVY: -0.512472

Insert paragraph

⊟Function[edit | edit source]

  • ⊞TIGRFAM:
    Metabolism Transport and binding proteins Other bacteriocin secretion accessory protein (TIGR01000; HMM-score: 571.3)
    and 4 more
    Genetic information processing Protein fate Protein and peptide secretion and trafficking type I secretion membrane fusion protein, HlyD family (TIGR01843; HMM-score: 59.8)
    Cellular processes Cellular processes Biosynthesis of natural products NHLM bacteriocin system secretion protein (TIGR03794; HMM-score: 25.7)
    Metabolism Transport and binding proteins Amino acids, peptides and amines NHLM bacteriocin system secretion protein (TIGR03794; HMM-score: 25.7)
    type III secretion protein HrpB7 (TIGR02559; HMM-score: 8.9)
  • TheSEED  :
    • Competence-stimulating peptide ABC transporter permease protein ComB
    DNA Metabolism DNA uptake, competence Competence in Streptococci  Competence-stimulating peptide ABC transporter permease protein ComB
  • PFAM:
    Hybrid (CL0105) Biotin_lipoyl_2; Biotin-lipoyl like (PF13533; HMM-score: 11.2)

Insert paragraph

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Insert paragraph

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.17
    • Cytoplasmic Membrane Score: 9.51
    • Cellwall Score: 0.16
    • Extracellular Score: 0.15
    • Internal Helix: 1
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.327369
    • TAT(Tat/SPI): 0.02041
    • LIPO(Sec/SPII): 0.026821
  • predicted transmembrane helices (TMHMM): 1

Insert paragraph

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: ADM83686 NCBI
  • UniProt:

Insert paragraph

⊟Protein sequence[edit | edit source]

  • MKPEFLESAEFYNRRYHNFSSSVIVPMALLLVFLLGFATVAEKEMSLSTRATVEPSRILANIQSTSNNRILVNHLEENKLVKKGDLLVQYQEGAEGVQAESYASQLDMLKDQKKQLEYLQKSLQEGENHFPEEDKFGYQATFRDYISQAGSLRASTSQQNETIASQNAAASQTQAEIGNLINQTEAKIRDYQTAKSAMETGASLASQNLAYSLYQSYKSQGEENPQTKVQAVAQVEAQISQLESSLATYRVQYAGSGTQQAYASGLSSQLESLKSQHLAKVGQELTLLAQKILEAESGKKVQGNLLDKGKITASEDGVLHLNPETSDSSMVAEGALLAQLYPSLEREGKAKLTAYLSSKDVARIKVGDSVRYTTTHDAGNQLFLDSTITSIDATATKTEKGNFFKIEAETNLTSEQAEKLRYGVEGRLQMITGKKSYLRYYLDQFLNKE

Insert paragraph

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

Insert paragraph

⊟Expression & Regulation[edit | edit source]

Insert paragraph

⊟Operon[edit | edit source]

Insert paragraph

⊟Regulation[edit | edit source]

Insert paragraph

⊟Expression data[edit | edit source]

Insert paragraph

⊞Biological Material[edit | edit source]

Insert paragraph

Insert paragraph

Insert paragraph

Insert paragraph

Insert paragraph

Insert paragraph

Insert paragraph

⊞Other Information[edit | edit source]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

Insert paragraph

⊟Relevant publications[edit | edit source]

Insert paragraph