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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 06-SEP-2024

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⊟Summary[edit | edit source]

Contents

  • 1 Summary
  • 2 Genome View
  • 3 Gene
    • 3.1 General
    • 3.2 Accession numbers
    • 3.3 Phenotype
    • 3.4 DNA sequence
  • 4 Protein
    • 4.1 General
    • 4.2 Function
    • 4.3 Structure, modifications & cofactors
    • 4.4 Localization
    • 4.5 Accession numbers
    • 4.6 Protein sequence
    • 4.7 Experimental data
  • 5 Expression & Regulation
    • 5.1 Operon
    • 5.2 Regulation
    • 5.3 Expression data
  • 6 Biological Material
    • 6.1 Mutants
    • 6.2 Expression vector
    • 6.3 lacZ fusion
    • 6.4 GFP fusion
    • 6.5 two-hybrid system
    • 6.6 FLAG-tag construct
    • 6.7 Antibody
  • 7 Other Information
  • 8 Literature
    • 8.1 References
    • 8.2 Relevant publications
  • organism: Streptococcus pneumoniae D39V
  • locus tag: SPV_0378 [new locus tag: SPV_RS02045 ]
  • pan locus tag?: PNEUPAN001304000
  • symbol: fabM
  • pan gene symbol?: fabM
  • synonym:
  • product: Trans-2,cis-3-Decenoyl-ACP isomerase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPV_0378 [new locus tag: SPV_RS02045 ]
  • symbol: fabM
  • product: Trans-2,cis-3-Decenoyl-ACP isomerase
  • replicon: chromosome
  • strand: +
  • coordinates: 383747..384532
  • length: 786
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: CP027540 (383747..384532) NCBI
  • BioCyc: SPV_0378 BioCyc
  • MicrobesOnline:
  • PneumoBrowse: SPV_0378 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    ATGGAACACATTATTTATCAGCTTGAAGAGGACTTGGCAATCCTTACCTTGAACCGTCCT
    GAGGTCGCAAATGGTTTTCATATTCCCATGTGTGAGGAGATTTTAGAAGCTCTGACTTTG
    GCAGAAGAAAATCCAGCTGTGCATTTTATCTTAATCAATGCCAATGGAAAGGTCTTCTCA
    GTTGGGGGAGATTTGGTAGAGATGAAGCGGGCAGTGGATGAGGATGATATTCCATCATTG
    ACAAAAATCGCAGAGTTGGTCAATACGATTTCTTATAAAATCAAGCAAATAGCCAAACCT
    GTTTTAATGGAAGTTGACGGTGCTGTTGCAGGTGCCGCAGCGAATATGGCTGTTGCGGCA
    GATTTCTGTTTGGCGACGGATAAGGCTAAGTTTATCCAAGCCTTTGTTGGTGTTGGTTTG
    GCTCCAGATGCAGGGGGAATTCATCTCTTGAGCCGCAGTATCGGTGTGACGCGTGCTGCT
    CAATTAGCTATGACAGGAGAGGCTTTAACGGCAGAAAAAGCCCTAGAATGGGGGTTGGTT
    TACCGCGTTTCTGAAGCTGAAAAACTTGAAAAGACGAGAGAACAGCTTCTTAAAAAATTA
    AGACGTGCTTCAAGTAATTCCTATGCTGCCATTAAGAAGTTGGTTTGGGAGAGCCAATTT
    AAAGACTGGCAGGGTTACGCTACTTTAGAACTGAACCTACAGAAATCCTTAGCTCAAACA
    GAGGATTTCAAAGAAGGAGTGCGAGCTCATTCGGAGAGAAGAAGACCTAAATTTATAGGA
    AAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    786

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPV_0378 [new locus tag: SPV_RS02045 ]
  • symbol: FabM
  • description: Trans-2,cis-3-Decenoyl-ACP isomerase
  • length: 261
  • theoretical pI: 6.0624
  • theoretical MW: 28735
  • GRAVY: -0.0544061

⊟Function[edit | edit source]

  • ⊞TIGRFAM:
    phenylacetate degradation probable enoyl-CoA hydratase PaaB (TIGR02280; EC 4.2.1.17; HMM-score: 192.6)
    and 8 more
    2-ketocyclohexanecarboxyl-CoA hydrolase (TIGR03210; EC 3.7.-.-; HMM-score: 93.6)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Menaquinone and ubiquinone naphthoate synthase (TIGR01929; EC 4.1.3.36; HMM-score: 89.1)
    Metabolism Fatty acid and phospholipid metabolism Degradation fatty oxidation complex, alpha subunit FadB (TIGR02437; EC 1.1.1.35,4.2.1.17,5.1.2.3,5.3.3.8; HMM-score: 72)
    fatty acid oxidation complex, alpha subunit, mitochondrial (TIGR02441; EC 1.1.1.35,4.2.1.17; HMM-score: 50.8)
    Metabolism Fatty acid and phospholipid metabolism Degradation fatty oxidation complex, alpha subunit FadJ (TIGR02440; EC 1.1.1.35,4.2.1.17,5.1.2.3; HMM-score: 47.1)
    6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase (TIGR03200; EC 3.-.-.-; HMM-score: 46.9)
    cyclohexa-1,5-dienecarbonyl-CoA hydratase (TIGR03189; EC 4.2.1.100; HMM-score: 45.8)
    benzoyl-CoA-dihydrodiol lyase (TIGR03222; EC 4.1.2.44; HMM-score: 21.5)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • ⊞PFAM:
    ClpP_crotonase (CL0127) ECH_1; Enoyl-CoA hydratase/isomerase (PF00378; HMM-score: 164.1)
    and 2 more
    ECH_2; Enoyl-CoA hydratase/isomerase (PF16113; HMM-score: 120)
    Peptidase_S49; Peptidase family S49 (PF01343; HMM-score: 11.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002776
    • TAT(Tat/SPI): 0.000107
    • LIPO(Sec/SPII): 0.000199
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: AVN85541 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MEHIIYQLEEDLAILTLNRPEVANGFHIPMCEEILEALTLAEENPAVHFILINANGKVFSVGGDLVEMKRAVDEDDIPSLTKIAELVNTISYKIKQIAKPVLMEVDGAVAGAAANMAVAADFCLATDKAKFIQAFVGVGLAPDAGGIHLLSRSIGVTRAAQLAMTGEALTAEKALEWGLVYRVSEAEKLEKTREQLLKKLRRASSNSYAAIKKLVWESQFKDWQGYATLELNLQKSLAQTEDFKEGVRAHSERRRPKFIGK

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • data available for TIGR4

⊟Expression data[edit | edit source]

  • PneumoExpress: SPV_0378 PneumoExpress

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SPV_0378&oldid=69140"
  • This page was last edited on 20 January 2022, at 15:42.
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