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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 17-FEB-2021

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae Xen35
  • locus tag: CXP32_RS10425 [old locus tag: CXP32_10425 ]
  • pan locus tag?: PNEUPAN003623000
  • symbol: CXP32_RS10425
  • pan gene symbol?: ulaE
  • synonym:
  • product: L-ribulose-5-phosphate 3-epimerase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: CXP32_RS10425 [old locus tag: CXP32_10425 ]
  • symbol: CXP32_RS10425
  • product: L-ribulose-5-phosphate 3-epimerase
  • replicon: chromosome
  • strand: -
  • coordinates: 1948587..1949450
  • length: 864
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NZ_CP025256 (1948587..1949450) NCBI
  • BioCyc:
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_1843 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    ATGGTACGTCCAATTGGAATTTATGAAAAGGCAACCCCAACACACTGTACTTGGCTAGAA
    CGTTTAAATTTTGCCAAGGAGTTAGGCTTTGATTTTGTCGAGATGTCTATTGACGAACGT
    GACGAGCGTTTAGCAAGACTTGACTGGAGTAAGGAAGAACGCTTGGAAGTTGTCAAAGCA
    ATCTATGAAACTGGTGTTCGTATTCCTTCTATCTGTTTTTCAGGCCATCGTCGCTACCCA
    TTGGGTTCAAAAGATCCAGTTCTAGAGGAAAAATCTCTAGAACTCATGAAAAAATGTATC
    GAATTAGCTCAAGACTTGGGAGTTCGTACGATTCAATTAGCTGGTTACGATGTTTACTAT
    GAGGAAAAGTCACCCCAGACACGCCAACGTTTTATCAAAAATTTGAGAAAAGCCTGTGAC
    TGGGCTGAAGAAGCTCAGGTGGTACTTGCTATTGAAATTATGGATGATCCTTTCATCAGT
    AGCATCGAAAAATATTTGGCTATAGAAAAAGAGATTGACTCTCCCTTCCTCTTTGTATAT
    CCAGATATTGGTAATGTGTCTGCATGGCATAATGATATCTATAGTGAGTTTTATCTTGGT
    CATCATGCCATCGCAGCTCTCCATCTCAAGGATACTTATGCAGTGACAGAAAGTTCAAAG
    GGCCAGTTCCGAGATGTACCTTTCGGGCAAGGTTGTGTCAAATGGGAAGAAGCTTTCGAT
    ATTTTAAAGGAAACCAATTATAATGGACCTTTCCTAATCGAAATGTGGTCTGAAAATTGT
    GAAACAGTAGAAGAAACACGCGCAGCCATTCAAGAGGCGCAAGCTTTTCTCTATCCACTC
    ATTAAGAAAGCAGGTTTGATGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    864

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: CXP32_RS10425 [old locus tag: CXP32_10425 ]
  • symbol: CXP32_RS10425
  • description: L-ribulose-5-phosphate 3-epimerase
  • length: 287
  • theoretical pI: 4.68784
  • theoretical MW: 33228.7
  • GRAVY: -0.309059

⊟Function[edit | edit source]

  • ⊞TIGRFAM:
    Metabolism Energy metabolism Sugars putative hexulose-6-phosphate isomerase (TIGR00542; HMM-score: 380.1)
    and 4 more
    hydroxypyruvate isomerase (TIGR03234; EC 5.3.1.22; HMM-score: 27)
    Genetic information processing DNA metabolism DNA replication, recombination, and repair apurinic endonuclease (APN1) (TIGR00587; HMM-score: 15.3)
    Metabolism Energy metabolism Sugars myo-inosose-2 dehydratase (TIGR04379; EC 4.2.1.44; HMM-score: 15.2)
    Genetic information processing DNA metabolism DNA replication, recombination, and repair DNA repair protein (mre11) (TIGR00583; HMM-score: 10.8)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • ⊞PFAM:
    TIM_barrel (CL0036) AP_endonuc_2; Xylose isomerase-like TIM barrel (PF01261; HMM-score: 183.2)
    and 2 more
    HTH (CL0123) HTH_Tnp_1; Transposase (PF01527; HMM-score: 17)
    Glyco_hydro_tim (CL0058) NAGidase; beta-N-acetylglucosaminidase (PF07555; HMM-score: 11.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002116
    • TAT(Tat/SPI): 0.000136
    • LIPO(Sec/SPII): 0.000335
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000252125 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MVRPIGIYEKATPTHCTWLERLNFAKELGFDFVEMSIDERDERLARLDWSKEERLEVVKAIYETGVRIPSICFSGHRRYPLGSKDPVLEEKSLELMKKCIELAQDLGVRTIQLAGYDVYYEEKSPQTRQRFIKNLRKACDWAEEAQVVLAIEIMDDPFISSIEKYLAIEKEIDSPFLFVYPDIGNVSAWHNDIYSEFYLGHHAIAALHLKDTYAVTESSKGQFRDVPFGQGCVKWEEAFDILKETNYNGPFLIEMWSENCETVEETRAAIQEAQAFLYPLIKKAGLM

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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