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From PneumoWiki
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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 31-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae 670-6B
  • locus tag: SP670_0183 [new locus tag: SP670_RS00925 ]
  • pan locus tag?: PNEUPAN000791000
  • symbol: SP670_0183
  • pan gene symbol?: argG
  • synonym:
  • product: argininosuccinate synthase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SP670_0183 [new locus tag: SP670_RS00925 ]
  • symbol: SP670_0183
  • product: argininosuccinate synthase
  • replicon: chromosome
  • strand: +
  • coordinates: 160626..161045
  • length: 420
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: CP002176 (160626..161045) NCBI
  • BioCyc: see SP670_RS00925
  • MicrobesOnline:
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    ATGAGTAAAGAAAAAGTAATTTTGGCCTATTCTGGCGGTTTGGACACATCAGTTGCTATT
    ACCTGGTTAAAGAAAGACTATGATGTTGTTTCAGTTTGTATGGATGTGGGTGAAGGGAAA
    GACTTAGATTTCATCCATGATAAGGCTCTTAAGGTTGGGGCAGTAGAATCTTATGTCATT
    GATGTTAAGGACGAATTTGCTACAGATTATGTGCTAGTGGCTCATCAGTCACATGCCTAT
    TATGAACAAAAGTATCCCTTGGTATCTGCCTTGAGCCGCCCTCTGATTTCTAAAAAATTG
    GTTGAAATAGCGCATCAGATAGGAGCGACTACAATTGCTCATGGTTGTACCGGTAAGGGG
    AATGACCAAGTCGAATACCAGATTGCAGTCGCTAAGAAAGCGAATGAAGCTAAAAAGTGA
    60
    120
    180
    240
    300
    360
    420

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SP670_0183 [new locus tag: SP670_RS00925 ]
  • symbol: SP670_0183
  • description: argininosuccinate synthase
  • length: 139
  • theoretical pI: 6.67431
  • theoretical MW: 15233.3
  • GRAVY: -0.117266

⊟Function[edit | edit source]

  • ⊞⊞reaction:
    EC 6.3.4.5?  ExPASy
    Argininosuccinate synthase ATP + L-citrulline + L-aspartate = AMP + diphosphate + N(omega)-(L-arginino)succinate
  • ⊞⊞TIGRFAM:
    Metabolism Amino acid biosynthesis Glutamate family argininosuccinate synthase (TIGR00032; EC 6.3.4.5; HMM-score: 170.8)
    and 4 more
    Genetic information processing Protein synthesis tRNA and rRNA base modification tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (TIGR00420; EC 2.1.1.61; HMM-score: 14.2)
    Hypothetical proteins Conserved TIGR00268 family protein (TIGR00268; HMM-score: 13.8)
    Unknown function General queuosine biosynthesis protein QueC (TIGR00364; HMM-score: 13.5)
    Metabolism Purines, pyrimidines, nucleosides, and nucleotides Purine ribonucleotide biosynthesis GMP synthase (glutamine-hydrolyzing), C-terminal domain (TIGR00884; EC 6.3.5.2; HMM-score: 12.2)
  • TheSEED  :
    • Argininosuccinate synthase (EC 6.3.4.5)
    Miscellaneous Miscellaneous - no subcategory EC 6.3.4.- Ligases that form carbon-nitrogen bonds  Argininosuccinate synthase (EC 6.3.4.5)
  • ⊞⊞PFAM:
    HUP (CL0039) Arginosuc_synth; Arginosuccinate synthase (PF00764; HMM-score: 183.1)
    and 3 more
    tRNA_Me_trans; tRNA methyl transferase HUP domain (PF03054; HMM-score: 16.5)
    QueC; Queuosine biosynthesis protein QueC (PF06508; HMM-score: 15.4)
    Diphthami_syn_2; Diphthamide synthase (PF01902; HMM-score: 13.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • ⊞⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.006373
    • TAT(Tat/SPI): 0.000252
    • LIPO(Sec/SPII): 0.001263
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: ADM90265 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MSKEKVILAYSGGLDTSVAITWLKKDYDVVSVCMDVGEGKDLDFIHDKALKVGAVESYVIDVKDEFATDYVLVAHQSHAYYEQKYPLVSALSRPLISKKLVEIAHQIGATTIAHGCTGKGNDQVEYQIAVAKKANEAKK

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SP670_0183&oldid=20206"
Insert paragraph

NCBI: 31-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae 670-6B
  • locus tag: SP670_0183 [new locus tag: SP670_RS00925 ]
  • pan locus tag?: PNEUPAN000791000
  • symbol: SP670_0183
  • pan gene symbol?: argG
  • synonym:
  • product: argininosuccinate synthase

Insert paragraph

⊟Genome View[edit | edit source]

Insert paragraph

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SP670_0183 [new locus tag: SP670_RS00925 ]
  • symbol: SP670_0183
  • product: argininosuccinate synthase
  • replicon: chromosome
  • strand: +
  • coordinates: 160626..161045
  • length: 420
  • essential: unknown

Insert paragraph

⊟Accession numbers[edit | edit source]

  • Location: CP002176 (160626..161045) NCBI
  • BioCyc: see SP670_RS00925
  • MicrobesOnline:
  • PneumoBrowse for strain D39V:

Insert paragraph

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    ATGAGTAAAGAAAAAGTAATTTTGGCCTATTCTGGCGGTTTGGACACATCAGTTGCTATT
    ACCTGGTTAAAGAAAGACTATGATGTTGTTTCAGTTTGTATGGATGTGGGTGAAGGGAAA
    GACTTAGATTTCATCCATGATAAGGCTCTTAAGGTTGGGGCAGTAGAATCTTATGTCATT
    GATGTTAAGGACGAATTTGCTACAGATTATGTGCTAGTGGCTCATCAGTCACATGCCTAT
    TATGAACAAAAGTATCCCTTGGTATCTGCCTTGAGCCGCCCTCTGATTTCTAAAAAATTG
    GTTGAAATAGCGCATCAGATAGGAGCGACTACAATTGCTCATGGTTGTACCGGTAAGGGG
    AATGACCAAGTCGAATACCAGATTGCAGTCGCTAAGAAAGCGAATGAAGCTAAAAAGTGA
    60
    120
    180
    240
    300
    360
    420

Insert paragraph

This data comes from external databases and cannot be edited.

Insert paragraph

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SP670_0183 [new locus tag: SP670_RS00925 ]
  • symbol: SP670_0183
  • description: argininosuccinate synthase
  • length: 139
  • theoretical pI: 6.67431
  • theoretical MW: 15233.3
  • GRAVY: -0.117266

Insert paragraph

⊟Function[edit | edit source]

  • ⊞reaction:
    EC 6.3.4.5?  ExPASy
    Argininosuccinate synthase ATP + L-citrulline + L-aspartate = AMP + diphosphate + N(omega)-(L-arginino)succinate
  • ⊞TIGRFAM:
    Metabolism Amino acid biosynthesis Glutamate family argininosuccinate synthase (TIGR00032; EC 6.3.4.5; HMM-score: 170.8)
    and 4 more
    Genetic information processing Protein synthesis tRNA and rRNA base modification tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (TIGR00420; EC 2.1.1.61; HMM-score: 14.2)
    Hypothetical proteins Conserved TIGR00268 family protein (TIGR00268; HMM-score: 13.8)
    Unknown function General queuosine biosynthesis protein QueC (TIGR00364; HMM-score: 13.5)
    Metabolism Purines, pyrimidines, nucleosides, and nucleotides Purine ribonucleotide biosynthesis GMP synthase (glutamine-hydrolyzing), C-terminal domain (TIGR00884; EC 6.3.5.2; HMM-score: 12.2)
  • TheSEED  :
    • Argininosuccinate synthase (EC 6.3.4.5)
    Miscellaneous Miscellaneous - no subcategory EC 6.3.4.- Ligases that form carbon-nitrogen bonds  Argininosuccinate synthase (EC 6.3.4.5)
  • ⊞PFAM:
    HUP (CL0039) Arginosuc_synth; Arginosuccinate synthase (PF00764; HMM-score: 183.1)
    and 3 more
    tRNA_Me_trans; tRNA methyl transferase HUP domain (PF03054; HMM-score: 16.5)
    QueC; Queuosine biosynthesis protein QueC (PF06508; HMM-score: 15.4)
    Diphthami_syn_2; Diphthamide synthase (PF01902; HMM-score: 13.9)

Insert paragraph

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Insert paragraph

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.006373
    • TAT(Tat/SPI): 0.000252
    • LIPO(Sec/SPII): 0.001263
  • predicted transmembrane helices (TMHMM): 0

Insert paragraph

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: ADM90265 NCBI
  • UniProt:

Insert paragraph

⊟Protein sequence[edit | edit source]

  • MSKEKVILAYSGGLDTSVAITWLKKDYDVVSVCMDVGEGKDLDFIHDKALKVGAVESYVIDVKDEFATDYVLVAHQSHAYYEQKYPLVSALSRPLISKKLVEIAHQIGATTIAHGCTGKGNDQVEYQIAVAKKANEAKK

Insert paragraph

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

Insert paragraph

⊟Expression & Regulation[edit | edit source]

Insert paragraph

⊟Operon[edit | edit source]

Insert paragraph

⊟Regulation[edit | edit source]

  • regulator:

Insert paragraph

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

Insert paragraph

⊞Biological Material[edit | edit source]

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

⊞Other Information[edit | edit source]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

Insert paragraph

⊟Relevant publications[edit | edit source]

Insert paragraph