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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 05-APR-2025

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae OXC141
  • locus tag: SPNOXC_RS01415 [old locus tags: SPNOXC02560 SPNOXC_02560 ]
  • pan locus tag?: PNEUPAN000986000
  • symbol: rpsK
  • pan gene symbol?: rpsK
  • synonym:
  • product: 30S ribosomal protein S11

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPNOXC_RS01415 [old locus tags: SPNOXC02560 SPNOXC_02560 ]
  • symbol: rpsK
  • product: 30S ribosomal protein S11
  • replicon: chromosome
  • strand: +
  • coordinates: 240575..240958
  • length: 384
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_017592 (240575..240958) NCBI
  • BioCyc: SPNOXC_RS01415 BioCyc
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_0217 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    TTGGCTAAACCAACACGTAAACGTCGTGTGAAAAAGAATATCGAATCTGGTATTGCTCAT
    ATTCACGCTACATTTAATAACACTATTGTTATGATTACTGATGTGCATGGTAATGCAATT
    GCTTGGTCATCAGCTGGTGCTCTTGGTTTCAAAGGTTCTCGTAAATCTACACCATTCGCT
    GCTCAAATGGCTTCTGAAGCTGCTGCTAAATCTGCACAAGAACACGGTCTTAAATCAGTT
    GAAGTTACTGTAAAAGGTCCAGGTTCTGGTCGTGAGTCAGCTATTCGTGCGCTTGCTGCC
    GCTGGTCTTGAAGTAACAGCAATTCGTGATGTGACTCCAGTGCCACACAATGGTGCTCGT
    CCTCCAAAACGTCGCCGTGTATAA
    60
    120
    180
    240
    300
    360
    384

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPNOXC_RS01415 [old locus tags: SPNOXC02560 SPNOXC_02560 ]
  • symbol: RpsK
  • description: 30S ribosomal protein S11
  • length: 127
  • theoretical pI: 11.9917
  • theoretical MW: 13385.3
  • GRAVY: -0.330709

⊟Function[edit | edit source]

  • ⊞TIGRFAM:
    Genetic information processing Protein synthesis Ribosomal proteins: synthesis and modification ribosomal protein uS11 (TIGR03632; HMM-score: 192)
    and 1 more
    Genetic information processing Protein synthesis Ribosomal proteins: synthesis and modification ribosomal protein uS11 (TIGR03628; HMM-score: 89.9)
  • TheSEED: see SPNOXC02560
  • ⊞PFAM:
    S11_L18p (CL0267) Ribosomal_S11; Ribosomal protein S11 (PF00411; HMM-score: 171.6)
    and 2 more
    Ribosomal_L18p; Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (PF00861; HMM-score: 16.4)
    no clan defined OAM_dimer; Dimerisation domain of d-ornithine 4,5-aminomutase (PF16554; HMM-score: 11.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.67
    • Cytoplasmic Membrane Score: 0.01
    • Cellwall Score: 0.15
    • Extracellular Score: 0.17
    • Internal Helices: 0
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.029892
    • TAT(Tat/SPI): 0.010097
    • LIPO(Sec/SPII): 0.001349
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_001118385 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MAKPTRKRRVKKNIESGIAHIHATFNNTIVMITDVHGNAIAWSSAGALGFKGSRKSTPFAAQMASEAAAKSAQEHGLKSVEVTVKGPGSGRESAIRALAAAGLEVTAIRDVTPVPHNGARPPKRRRV

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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