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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SPG_1495 [new locus tag: SPG_RS07450 ]
  • symbol: clpX
  • product: ATP-dependent Clp protease, ATP-binding subunit ClpX
  • replicon: chromosome
  • strand: -
  • coordinates: 1441598..1442830
  • length: 1233
  • essential: unknown other strains

Accession numbers[edit | edit source]

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    ATGTCTACAAATAGAAAAAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAACCAA
    GAAGAAGTACAAAAAATAATTGCTGGCAACAATGCTTTTATTTGTAATGAATGCGTGGAG
    TTAGCTCAGGAAATCATTCGAGAAGAATTGGTTGAGGAAGTCTTGGCAGACTTGTCTGAG
    GTGCCAAAACCAATTGAACTCCTCCATATCTTGAACCACTATGTAATTGGTCAAGATCGT
    GCCAAGCGTGCCTTGGCAGTGGCGGTTTATAACCACTACAAACGCATCAATTTCCACGAT
    ACACGCGAAGAGTCAGAAGATGTGGATTTGCAGAAGTCAAACATTTTGATGATTGGCCCA
    ACTGGTTCAGGGAAAACTTTCCTTGCCCAGACCTTGGCTAAGAGCTTGAATGTACCTTTT
    GCTATTGCGGATGCGACAGCTCTGACGGAGGCTGGTTATGTGGGTGAGGATGTGGAAAAT
    ATCCTCCTCAAACTCTTGCAGGTTGCTGACTTTAACATCGAACGTGCAGAGCGTGGCATT
    ATCTATGTGGATGAAATTGACAAGATTGCCAAGAAGAGTGAGAATGTGTCTATCACACGT
    GATGTTTCTGGTGAAGGGGTGCAACAAGCCCTTCTCAAGATTATCGAGGGAACTGTTGCT
    AGCGTGCCGCCTCAAGGTGGACGCAAACATCCACAACAAGAGATGATTCAAGTGGATACA
    AAAAATATCCTCTTCATCGTGGGTGGTGCTTTTGATGGTATTGAAGAAATTGTCAAACAA
    CGTATGGGTGAAAAAGTCATCGGATTTGGTCAAAACAATAAGGCGATTGACGAAAACAGC
    TCATACATGCAAGAAATCATCGCTGAAGACATTCAAAAATTTGGTATTATCCCTGAGTTG
    ATTGGACGCTTGCCTGTTTTTGCGGCTCTTGAGCAATTGACTGTTGATGACTTGGTTCGC
    ATCTTGAAAGAGCCAAGAAATGCCTTGGTGAAACAATACCAAACCTTGCTTTCTTATGAT
    GATGTTGAGTTGGAATTTGACGACGAAGCCCTTCAAGAGATTGCTAATAAAGCAATCGAA
    CGGAAGACAGGGGCGCGTGGACTTCGCTCCATTATCGAAGAAACCATGCTAGATGTTATG
    TTTGAGGTGCCGAGTCAGGAAAATGTGAAATTGGTTCGCATCACTAAAGAAACTGTCGAT
    GGAACGGATAAACCGATCCTAGAAACAGCCTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1233

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SPG_1495 [new locus tag: SPG_RS07450 ]
  • symbol: ClpX
  • description: ATP-dependent Clp protease, ATP-binding subunit ClpX
  • length: 410
  • theoretical pI: 4.45506
  • theoretical MW: 45816.1
  • GRAVY: -0.188293

Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Protein fate Degradation of proteins, peptides, and glycopeptides ATP-dependent Clp protease, ATP-binding subunit ClpX (TIGR00382; HMM-score: 635.9)
    Genetic information processing Protein fate Protein folding and stabilization ATP-dependent Clp protease, ATP-binding subunit ClpX (TIGR00382; HMM-score: 635.9)
    and 24 more
    Genetic information processing Protein fate Protein folding and stabilization ATP-dependent protease HslVU, ATPase subunit (TIGR00390; HMM-score: 215.6)
    Genetic information processing Protein fate Degradation of proteins, peptides, and glycopeptides ATP-dependent Clp protease ATP-binding subunit ClpA (TIGR02639; HMM-score: 51.4)
    Genetic information processing Protein fate Protein folding and stabilization ATP-dependent chaperone protein ClpB (TIGR03346; HMM-score: 39.5)
    AAA family ATPase, CDC48 subfamily (TIGR01243; HMM-score: 34)
    Cellular processes Cellular processes Pathogenesis type VI secretion ATPase, ClpV1 family (TIGR03345; HMM-score: 32.4)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking type VI secretion ATPase, ClpV1 family (TIGR03345; HMM-score: 32.4)
    26S proteasome subunit P45 family (TIGR01242; HMM-score: 29.9)
    Genetic information processing DNA metabolism DNA replication, recombination, and repair Holliday junction DNA helicase RuvB (TIGR00635; EC 3.6.4.12; HMM-score: 27)
    Cellular processes Cellular processes Cell division ATP-dependent metallopeptidase HflB (TIGR01241; EC 3.4.24.-; HMM-score: 24.1)
    Genetic information processing Protein fate Degradation of proteins, peptides, and glycopeptides ATP-dependent metallopeptidase HflB (TIGR01241; EC 3.4.24.-; HMM-score: 24.1)
    Unknown function General Mg chelatase-like protein (TIGR00368; HMM-score: 21)
    Genetic information processing Protein fate Degradation of proteins, peptides, and glycopeptides endopeptidase La (TIGR00763; EC 3.4.21.53; HMM-score: 20.9)
    Cellular processes Cellular processes Other gas vesicle protein GvpN (TIGR02640; HMM-score: 19)
    Genetic information processing Protein fate Degradation of proteins, peptides, and glycopeptides putative ATP-dependent protease (TIGR00764; HMM-score: 18.8)
    Genetic information processing DNA metabolism DNA replication, recombination, and repair orc1/cdc6 family replication initiation protein (TIGR02928; HMM-score: 18.3)
    Genetic information processing DNA metabolism DNA replication, recombination, and repair DNA polymerase III, subunit gamma and tau (TIGR02397; EC 2.7.7.7; HMM-score: 16.7)
    nicotinamide-nucleotide adenylyltransferase (TIGR01526; EC 2.7.7.1; HMM-score: 16.6)
    type IV secretion/conjugal transfer ATPase, VirB4 family (TIGR00929; HMM-score: 15.5)
    Cellular processes Cellular processes Conjugation P-type conjugative transfer ATPase TrbB (TIGR02782; HMM-score: 14.6)
    Cellular processes Cellular processes Chemotaxis and motility flagellar biosynthesis protein FlhF (TIGR03499; HMM-score: 14.4)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking type VII secretion AAA-ATPase EccA (TIGR03922; HMM-score: 14.3)
    Genetic information processing Protein synthesis tRNA and rRNA base modification tRNA dimethylallyltransferase (TIGR00174; EC 2.5.1.75; HMM-score: 13.9)
    Hypothetical proteins Conserved TIGR00270 family protein (TIGR00270; HMM-score: 13.8)
    type-IV secretion system protein TraC (TIGR02746; HMM-score: 11.3)
  • TheSEED  :
    • ATP-dependent Clp protease ATP-binding subunit ClpX
    Protein Metabolism Protein degradation Proteolysis in bacteria, ATP-dependent  ATP-dependent Clp protease ATP-binding subunit ClpX
  • PFAM:
    P-loop_NTPase (CL0023) AAA_2; AAA domain (Cdc48 subfamily) (PF07724; HMM-score: 159.6)
    and 36 more
    AAA_lid (CL0671) ClpB_D2-small; C-terminal, D2-small domain, of ClpB protein (PF10431; HMM-score: 66)
    Zn_Beta_Ribbon (CL0167) zf-C4_ClpX; ClpX C4-type zinc finger (PF06689; HMM-score: 64.8)
    P-loop_NTPase (CL0023) AAA; ATPase family associated with various cellular activities (AAA) (PF00004; HMM-score: 56.1)
    RuvB_N; Holliday junction DNA helicase RuvB P-loop domain (PF05496; HMM-score: 27.2)
    Mg_chelatase; Magnesium chelatase, subunit ChlI (PF01078; HMM-score: 25.8)
    AAA_5; AAA domain (dynein-related subfamily) (PF07728; HMM-score: 25.4)
    AAA_22; AAA domain (PF13401; HMM-score: 24.4)
    Sigma54_activat; Sigma-54 interaction domain (PF00158; HMM-score: 23.5)
    MCM; MCM P-loop domain (PF00493; HMM-score: 23.4)
    Sigma54_activ_2; Sigma-54 interaction domain (PF14532; HMM-score: 23.2)
    AAA_33; AAA domain (PF13671; HMM-score: 19.1)
    IstB_IS21; IstB-like ATP binding protein (PF01695; HMM-score: 18.6)
    AAA_7; P-loop containing dynein motor region (PF12775; HMM-score: 18.3)
    AAA_16; AAA ATPase domain (PF13191; HMM-score: 18.3)
    AAA_18; AAA domain (PF13238; HMM-score: 18.3)
    NACHT; NACHT domain (PF05729; HMM-score: 17.7)
    AAA_14; AAA domain (PF13173; HMM-score: 17.5)
    DEAD; DEAD/DEAH box helicase (PF00270; HMM-score: 15.9)
    TsaE; Threonylcarbamoyl adenosine biosynthesis protein TsaE (PF02367; HMM-score: 15.4)
    PhoH; PhoH-like protein (PF02562; HMM-score: 15.3)
    T2SSE; Type II/IV secretion system protein (PF00437; HMM-score: 14.8)
    AAA_29; P-loop containing region of AAA domain (PF13555; HMM-score: 14.4)
    PduV-EutP; Ethanolamine utilisation - propanediol utilisation (PF10662; HMM-score: 14.1)
    ResIII; Type III restriction enzyme, res subunit (PF04851; HMM-score: 13.9)
    RNA_helicase; RNA helicase (PF00910; HMM-score: 13.8)
    AAA_17; AAA domain (PF13207; HMM-score: 13.7)
    ABC_tran; ABC transporter (PF00005; HMM-score: 13.1)
    FtsK_SpoIIIE; FtsK/SpoIIIE family (PF01580; HMM-score: 13)
    BrxC_BrxD; BREX system ATP-binding protein BrxC/D (PF10923; HMM-score: 13)
    Zeta_toxin; Zeta toxin (PF06414; HMM-score: 12.8)
    SMC_N; RecF/RecN/SMC N terminal domain (PF02463; HMM-score: 12.3)
    AAA_19; AAA domain (PF13245; HMM-score: 12.3)
    Zn_Beta_Ribbon (CL0167) Zn-ribbon_8; Zinc ribbon domain (PF09723; HMM-score: 11.8)
    P-loop_NTPase (CL0023) AAA_8; P-loop containing dynein motor region D4 (PF12780; HMM-score: 11.7)
    AAA_23; AAA domain (PF13476; HMM-score: 11.5)
    no clan defined Gin; Inhibitor of sigma-G Gin (PF10764; HMM-score: 9.5)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.020885
    • TAT(Tat/SPI): 0.000366
    • LIPO(Sec/SPII): 0.00124
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MSTNRKNDMMVYCSFCGKNQEEVQKIIAGNNAFICNECVELAQEIIREELVEEVLADLSEVPKPIELLHILNHYVIGQDRAKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDTKNILFIVGGAFDGIEEIVKQRMGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKETVDGTDKPILETA

Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

Expression & Regulation[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Expression data[edit | edit source]

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]

NCBI: 30-JAN-2014

Summary[edit | edit source]

  • organism: Streptococcus pneumoniae G54
  • locus tag: SPG_1495 [new locus tag: SPG_RS07450 ]
  • pan locus tag?: PNEUPAN002962000
  • symbol: clpX
  • pan gene symbol?: clpX
  • synonym:
  • product: ATP-dependent Clp protease, ATP-binding subunit ClpX

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SPG_1495 [new locus tag: SPG_RS07450 ]
  • symbol: clpX
  • product: ATP-dependent Clp protease, ATP-binding subunit ClpX
  • replicon: chromosome
  • strand: -
  • coordinates: 1441598..1442830
  • length: 1233
  • essential: unknown other strains

Accession numbers[edit | edit source]

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    ATGTCTACAAATAGAAAAAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAACCAA
    GAAGAAGTACAAAAAATAATTGCTGGCAACAATGCTTTTATTTGTAATGAATGCGTGGAG
    TTAGCTCAGGAAATCATTCGAGAAGAATTGGTTGAGGAAGTCTTGGCAGACTTGTCTGAG
    GTGCCAAAACCAATTGAACTCCTCCATATCTTGAACCACTATGTAATTGGTCAAGATCGT
    GCCAAGCGTGCCTTGGCAGTGGCGGTTTATAACCACTACAAACGCATCAATTTCCACGAT
    ACACGCGAAGAGTCAGAAGATGTGGATTTGCAGAAGTCAAACATTTTGATGATTGGCCCA
    ACTGGTTCAGGGAAAACTTTCCTTGCCCAGACCTTGGCTAAGAGCTTGAATGTACCTTTT
    GCTATTGCGGATGCGACAGCTCTGACGGAGGCTGGTTATGTGGGTGAGGATGTGGAAAAT
    ATCCTCCTCAAACTCTTGCAGGTTGCTGACTTTAACATCGAACGTGCAGAGCGTGGCATT
    ATCTATGTGGATGAAATTGACAAGATTGCCAAGAAGAGTGAGAATGTGTCTATCACACGT
    GATGTTTCTGGTGAAGGGGTGCAACAAGCCCTTCTCAAGATTATCGAGGGAACTGTTGCT
    AGCGTGCCGCCTCAAGGTGGACGCAAACATCCACAACAAGAGATGATTCAAGTGGATACA
    AAAAATATCCTCTTCATCGTGGGTGGTGCTTTTGATGGTATTGAAGAAATTGTCAAACAA
    CGTATGGGTGAAAAAGTCATCGGATTTGGTCAAAACAATAAGGCGATTGACGAAAACAGC
    TCATACATGCAAGAAATCATCGCTGAAGACATTCAAAAATTTGGTATTATCCCTGAGTTG
    ATTGGACGCTTGCCTGTTTTTGCGGCTCTTGAGCAATTGACTGTTGATGACTTGGTTCGC
    ATCTTGAAAGAGCCAAGAAATGCCTTGGTGAAACAATACCAAACCTTGCTTTCTTATGAT
    GATGTTGAGTTGGAATTTGACGACGAAGCCCTTCAAGAGATTGCTAATAAAGCAATCGAA
    CGGAAGACAGGGGCGCGTGGACTTCGCTCCATTATCGAAGAAACCATGCTAGATGTTATG
    TTTGAGGTGCCGAGTCAGGAAAATGTGAAATTGGTTCGCATCACTAAAGAAACTGTCGAT
    GGAACGGATAAACCGATCCTAGAAACAGCCTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1233

This data comes from external databases and cannot be edited.

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SPG_1495 [new locus tag: SPG_RS07450 ]
  • symbol: ClpX
  • description: ATP-dependent Clp protease, ATP-binding subunit ClpX
  • length: 410
  • theoretical pI: 4.45506
  • theoretical MW: 45816.1
  • GRAVY: -0.188293

Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Protein fate Degradation of proteins, peptides, and glycopeptides ATP-dependent Clp protease, ATP-binding subunit ClpX (TIGR00382; HMM-score: 635.9)
    Genetic information processing Protein fate Protein folding and stabilization ATP-dependent Clp protease, ATP-binding subunit ClpX (TIGR00382; HMM-score: 635.9)
    and 24 more
    Genetic information processing Protein fate Protein folding and stabilization ATP-dependent protease HslVU, ATPase subunit (TIGR00390; HMM-score: 215.6)
    Genetic information processing Protein fate Degradation of proteins, peptides, and glycopeptides ATP-dependent Clp protease ATP-binding subunit ClpA (TIGR02639; HMM-score: 51.4)
    Genetic information processing Protein fate Protein folding and stabilization ATP-dependent chaperone protein ClpB (TIGR03346; HMM-score: 39.5)
    AAA family ATPase, CDC48 subfamily (TIGR01243; HMM-score: 34)
    Cellular processes Cellular processes Pathogenesis type VI secretion ATPase, ClpV1 family (TIGR03345; HMM-score: 32.4)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking type VI secretion ATPase, ClpV1 family (TIGR03345; HMM-score: 32.4)
    26S proteasome subunit P45 family (TIGR01242; HMM-score: 29.9)
    Genetic information processing DNA metabolism DNA replication, recombination, and repair Holliday junction DNA helicase RuvB (TIGR00635; EC 3.6.4.12; HMM-score: 27)
    Cellular processes Cellular processes Cell division ATP-dependent metallopeptidase HflB (TIGR01241; EC 3.4.24.-; HMM-score: 24.1)
    Genetic information processing Protein fate Degradation of proteins, peptides, and glycopeptides ATP-dependent metallopeptidase HflB (TIGR01241; EC 3.4.24.-; HMM-score: 24.1)
    Unknown function General Mg chelatase-like protein (TIGR00368; HMM-score: 21)
    Genetic information processing Protein fate Degradation of proteins, peptides, and glycopeptides endopeptidase La (TIGR00763; EC 3.4.21.53; HMM-score: 20.9)
    Cellular processes Cellular processes Other gas vesicle protein GvpN (TIGR02640; HMM-score: 19)
    Genetic information processing Protein fate Degradation of proteins, peptides, and glycopeptides putative ATP-dependent protease (TIGR00764; HMM-score: 18.8)
    Genetic information processing DNA metabolism DNA replication, recombination, and repair orc1/cdc6 family replication initiation protein (TIGR02928; HMM-score: 18.3)
    Genetic information processing DNA metabolism DNA replication, recombination, and repair DNA polymerase III, subunit gamma and tau (TIGR02397; EC 2.7.7.7; HMM-score: 16.7)
    nicotinamide-nucleotide adenylyltransferase (TIGR01526; EC 2.7.7.1; HMM-score: 16.6)
    type IV secretion/conjugal transfer ATPase, VirB4 family (TIGR00929; HMM-score: 15.5)
    Cellular processes Cellular processes Conjugation P-type conjugative transfer ATPase TrbB (TIGR02782; HMM-score: 14.6)
    Cellular processes Cellular processes Chemotaxis and motility flagellar biosynthesis protein FlhF (TIGR03499; HMM-score: 14.4)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking type VII secretion AAA-ATPase EccA (TIGR03922; HMM-score: 14.3)
    Genetic information processing Protein synthesis tRNA and rRNA base modification tRNA dimethylallyltransferase (TIGR00174; EC 2.5.1.75; HMM-score: 13.9)
    Hypothetical proteins Conserved TIGR00270 family protein (TIGR00270; HMM-score: 13.8)
    type-IV secretion system protein TraC (TIGR02746; HMM-score: 11.3)
  • TheSEED  :
    • ATP-dependent Clp protease ATP-binding subunit ClpX
    Protein Metabolism Protein degradation Proteolysis in bacteria, ATP-dependent  ATP-dependent Clp protease ATP-binding subunit ClpX
  • PFAM:
    P-loop_NTPase (CL0023) AAA_2; AAA domain (Cdc48 subfamily) (PF07724; HMM-score: 159.6)
    and 36 more
    AAA_lid (CL0671) ClpB_D2-small; C-terminal, D2-small domain, of ClpB protein (PF10431; HMM-score: 66)
    Zn_Beta_Ribbon (CL0167) zf-C4_ClpX; ClpX C4-type zinc finger (PF06689; HMM-score: 64.8)
    P-loop_NTPase (CL0023) AAA; ATPase family associated with various cellular activities (AAA) (PF00004; HMM-score: 56.1)
    RuvB_N; Holliday junction DNA helicase RuvB P-loop domain (PF05496; HMM-score: 27.2)
    Mg_chelatase; Magnesium chelatase, subunit ChlI (PF01078; HMM-score: 25.8)
    AAA_5; AAA domain (dynein-related subfamily) (PF07728; HMM-score: 25.4)
    AAA_22; AAA domain (PF13401; HMM-score: 24.4)
    Sigma54_activat; Sigma-54 interaction domain (PF00158; HMM-score: 23.5)
    MCM; MCM P-loop domain (PF00493; HMM-score: 23.4)
    Sigma54_activ_2; Sigma-54 interaction domain (PF14532; HMM-score: 23.2)
    AAA_33; AAA domain (PF13671; HMM-score: 19.1)
    IstB_IS21; IstB-like ATP binding protein (PF01695; HMM-score: 18.6)
    AAA_7; P-loop containing dynein motor region (PF12775; HMM-score: 18.3)
    AAA_16; AAA ATPase domain (PF13191; HMM-score: 18.3)
    AAA_18; AAA domain (PF13238; HMM-score: 18.3)
    NACHT; NACHT domain (PF05729; HMM-score: 17.7)
    AAA_14; AAA domain (PF13173; HMM-score: 17.5)
    DEAD; DEAD/DEAH box helicase (PF00270; HMM-score: 15.9)
    TsaE; Threonylcarbamoyl adenosine biosynthesis protein TsaE (PF02367; HMM-score: 15.4)
    PhoH; PhoH-like protein (PF02562; HMM-score: 15.3)
    T2SSE; Type II/IV secretion system protein (PF00437; HMM-score: 14.8)
    AAA_29; P-loop containing region of AAA domain (PF13555; HMM-score: 14.4)
    PduV-EutP; Ethanolamine utilisation - propanediol utilisation (PF10662; HMM-score: 14.1)
    ResIII; Type III restriction enzyme, res subunit (PF04851; HMM-score: 13.9)
    RNA_helicase; RNA helicase (PF00910; HMM-score: 13.8)
    AAA_17; AAA domain (PF13207; HMM-score: 13.7)
    ABC_tran; ABC transporter (PF00005; HMM-score: 13.1)
    FtsK_SpoIIIE; FtsK/SpoIIIE family (PF01580; HMM-score: 13)
    BrxC_BrxD; BREX system ATP-binding protein BrxC/D (PF10923; HMM-score: 13)
    Zeta_toxin; Zeta toxin (PF06414; HMM-score: 12.8)
    SMC_N; RecF/RecN/SMC N terminal domain (PF02463; HMM-score: 12.3)
    AAA_19; AAA domain (PF13245; HMM-score: 12.3)
    Zn_Beta_Ribbon (CL0167) Zn-ribbon_8; Zinc ribbon domain (PF09723; HMM-score: 11.8)
    P-loop_NTPase (CL0023) AAA_8; P-loop containing dynein motor region D4 (PF12780; HMM-score: 11.7)
    AAA_23; AAA domain (PF13476; HMM-score: 11.5)
    no clan defined Gin; Inhibitor of sigma-G Gin (PF10764; HMM-score: 9.5)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.020885
    • TAT(Tat/SPI): 0.000366
    • LIPO(Sec/SPII): 0.00124
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MSTNRKNDMMVYCSFCGKNQEEVQKIIAGNNAFICNECVELAQEIIREELVEEVLADLSEVPKPIELLHILNHYVIGQDRAKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDTKNILFIVGGAFDGIEEIVKQRMGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKETVDGTDKPILETA

Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

Expression & Regulation[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Expression data[edit | edit source]

Biological Material[edit | edit source]

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

Other Information[edit | edit source]

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]