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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SPR_RS05385
  • symbol: SPR_RS05385
  • product: IS5 family transposase
  • replicon: chromosome
  • strand: -
  • coordinates: join(1075330..1075682,1075682..1076132)
  • length: 804
  • essential: unknown

Accession numbers[edit | edit source]

  • Location: NC_003098 join(1075330..1075682,1075682..1076132) NCBI
  • BioCyc:
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_2304 PneumoBrowse

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    ATGAATTATGAAGCAAGTAAACAACTAACTGATGCACGATTTAAGCGTCTTGTTGGTGTT
    CAACGCACGACTTTTGAAGAGATATTAGCTGTATTAAAAACAGCTTATCAACTTAAACAC
    GCAAAAGGTGGACGAAAACCTAAATTAAGCCTAGAAGACTTTCTTATGGCCACTCTTCAA
    TATGTGCGAGAATATCGAACTTATGAAGAAATTGCGGCTGATTTTGGTATCCACGAAAGC
    AACTTAATCCGTCGGAGCCGATGGGTTGAAGTAACTCTTGTTCAAAGTGGTGTTACGATT
    TCAAGAACTCCTCTCAGTTCTGAGGACACGGTAATGATTGATGCGACGGAAGTACAAATC
    AATCGCCCTAAAAAAGAATTAGCGAATTATTCTGGTAAAAAGAAATGCCACGCTATGAAG
    GCTCAAGCGATTGTCACAAGTCAAGGGAGATTTGTTTCTTTGGATATCACTGTGAACTAT
    TGTCATGATATGAAGTTGTTCAAAATGAGTCGCAGAAATATCGGACAAGCTGGTAAAATC
    TTGGCTGACAGTGGTTATCAAGGGCTCATGAAGATATATCCTCAAGCACAAACTCCACGT
    AAATCCAGCAAACTCAAGCCGCTAACAGCTGAAGATAAAGCCTGTAACCATGCGCTATCC
    AAGGAGAGAAGCAAGGTTGAGAACATCTTTGCCAAAGTAAAAACGTTTAAAATGTTTTCA
    ACAACCTATCGAAATCATCGTAAACGCTTCGGATTACGAATGAATTTGAGTGCTGGTATT
    ATCAATCATGAACTAGGATTCTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    804

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SPR_RS05385
  • symbol: SPR_RS05385
  • description: IS5 family transposase
  • length: 267
  • theoretical pI: 10.5868
  • theoretical MW: 30519.2
  • GRAVY: -0.492509

Function[edit | edit source]

  • TIGRFAM:
  • TheSEED:
  • PFAM:
    RNase_H (CL0219) DDE_Tnp_4; DDE superfamily endonuclease (PF13359; HMM-score: 73.9)
    DDE_Tnp_1; Transposase DDE domain (PF01609; HMM-score: 61.8)
    and 3 more
    HTH (CL0123) HTH_Tnp_4; Helix-turn-helix of DDE superfamily endonuclease (PF13613; HMM-score: 47.3)
    RNase_H (CL0219) DDE_Tnp_1_3; Transposase DDE domain (PF13612; HMM-score: 19.7)
    DDE_Tnp_1_6; Transposase DDE domain (PF13751; HMM-score: 14.5)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002194
    • TAT(Tat/SPI): 0.000489
    • LIPO(Sec/SPII): 0.00068
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_106269349 NCBI
  • UniProt:

Protein sequence[edit | edit source]

  • MNYEASKQLTDARFKRLVGVQRTTFEEILAVLKTAYQLKHAKGGRKPKLSLEDFLMATLQYVREYRTYEEIAADFGIHESNLIRRSRWVEVTLVQSGVTISRTPLSSEDTVMIDATEVQINRPKKELANYSGKKKCHAMKAQAIVTSQGRFVSLDITVNYCHDMKLFKMSRRNIGQAGKILADSGYQGLMKIYPQAQTPRKSSKLKPLTAEDKACNHALSKERSKVENIFAKVKTFKMFSTTYRNHRKRFGLRMNLSAGIINHELGF

Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Expression data[edit | edit source]

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]

NCBI: 25-NOV-2024

Summary[edit | edit source]

  • organism: Streptococcus pneumoniae R6
  • locus tag: SPR_RS05385
  • pan locus tag?: PNEUPAN001568000
  • symbol: SPR_RS05385
  • pan gene symbol?: tnp (pseudogene)
  • synonym:
  • product: IS5 family transposase

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SPR_RS05385
  • symbol: SPR_RS05385
  • product: IS5 family transposase
  • replicon: chromosome
  • strand: -
  • coordinates: join(1075330..1075682,1075682..1076132)
  • length: 804
  • essential: unknown

Accession numbers[edit | edit source]

  • Location: NC_003098 join(1075330..1075682,1075682..1076132) NCBI
  • BioCyc:
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_2304 PneumoBrowse

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    ATGAATTATGAAGCAAGTAAACAACTAACTGATGCACGATTTAAGCGTCTTGTTGGTGTT
    CAACGCACGACTTTTGAAGAGATATTAGCTGTATTAAAAACAGCTTATCAACTTAAACAC
    GCAAAAGGTGGACGAAAACCTAAATTAAGCCTAGAAGACTTTCTTATGGCCACTCTTCAA
    TATGTGCGAGAATATCGAACTTATGAAGAAATTGCGGCTGATTTTGGTATCCACGAAAGC
    AACTTAATCCGTCGGAGCCGATGGGTTGAAGTAACTCTTGTTCAAAGTGGTGTTACGATT
    TCAAGAACTCCTCTCAGTTCTGAGGACACGGTAATGATTGATGCGACGGAAGTACAAATC
    AATCGCCCTAAAAAAGAATTAGCGAATTATTCTGGTAAAAAGAAATGCCACGCTATGAAG
    GCTCAAGCGATTGTCACAAGTCAAGGGAGATTTGTTTCTTTGGATATCACTGTGAACTAT
    TGTCATGATATGAAGTTGTTCAAAATGAGTCGCAGAAATATCGGACAAGCTGGTAAAATC
    TTGGCTGACAGTGGTTATCAAGGGCTCATGAAGATATATCCTCAAGCACAAACTCCACGT
    AAATCCAGCAAACTCAAGCCGCTAACAGCTGAAGATAAAGCCTGTAACCATGCGCTATCC
    AAGGAGAGAAGCAAGGTTGAGAACATCTTTGCCAAAGTAAAAACGTTTAAAATGTTTTCA
    ACAACCTATCGAAATCATCGTAAACGCTTCGGATTACGAATGAATTTGAGTGCTGGTATT
    ATCAATCATGAACTAGGATTCTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    804

This data comes from external databases and cannot be edited.

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SPR_RS05385
  • symbol: SPR_RS05385
  • description: IS5 family transposase
  • length: 267
  • theoretical pI: 10.5868
  • theoretical MW: 30519.2
  • GRAVY: -0.492509

Function[edit | edit source]

  • TIGRFAM:
  • TheSEED:
  • PFAM:
    RNase_H (CL0219) DDE_Tnp_4; DDE superfamily endonuclease (PF13359; HMM-score: 73.9)
    DDE_Tnp_1; Transposase DDE domain (PF01609; HMM-score: 61.8)
    and 3 more
    HTH (CL0123) HTH_Tnp_4; Helix-turn-helix of DDE superfamily endonuclease (PF13613; HMM-score: 47.3)
    RNase_H (CL0219) DDE_Tnp_1_3; Transposase DDE domain (PF13612; HMM-score: 19.7)
    DDE_Tnp_1_6; Transposase DDE domain (PF13751; HMM-score: 14.5)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002194
    • TAT(Tat/SPI): 0.000489
    • LIPO(Sec/SPII): 0.00068
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_106269349 NCBI
  • UniProt:

Protein sequence[edit | edit source]

  • MNYEASKQLTDARFKRLVGVQRTTFEEILAVLKTAYQLKHAKGGRKPKLSLEDFLMATLQYVREYRTYEEIAADFGIHESNLIRRSRWVEVTLVQSGVTISRTPLSSEDTVMIDATEVQINRPKKELANYSGKKKCHAMKAQAIVTSQGRFVSLDITVNYCHDMKLFKMSRRNIGQAGKILADSGYQGLMKIYPQAQTPRKSSKLKPLTAEDKACNHALSKERSKVENIFAKVKTFKMFSTTYRNHRKRFGLRMNLSAGIINHELGF

Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Expression data[edit | edit source]

Biological Material[edit | edit source]

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

Other Information[edit | edit source]

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]