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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: MYY_RS03660 [old locus tag: MYY_0712 ]
  • symbol: MYY_RS03660
  • product: N-acetylmuramoyl-L-alanine amidase family protein
  • replicon: chromosome
  • strand: +
  • coordinates: 700782..701780
  • length: 999
  • essential: unknown

Accession numbers[edit | edit source]

  • Location: NC_017769 (700782..701780) NCBI
  • BioCyc: MYY_RS03660 BioCyc
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_0579 PneumoBrowse

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATGAATAAACGTCTATTTTTAAAAATGAGTCTGGTGACGTTGCCAATTTTAGCCTTGTTT
    TCACAACCAGTTTTGGCGGAAGAAAACATCCATTTTTCGAGCTGTAAGGAAGCTTGGGCG
    AATGGCTATTCGGATATTCACGAGGGAGAACCTGGTTATTCTGCCAAGTTAGACCGTGAT
    CATGATGGTGTGGCTTGCGAATTGAAAAATGCTCCTAAGGGTGCTTTTAAAGCAAAACAA
    GCGGCTACAACTCAAACTGATACAACTTCATCCACAGCAAGTGGTTGGGTTAAGCAGGAC
    GGTTCTTGGTACTATTTTGATGGAAATGGAAATCTAGTGAAAAATGCATGGCAGGGAAAC
    TATTACCTGAAAGCTGATGGTAAAATGGCACAGAGTGAATGGATTTATGACTCTTCTTAT
    CAAGCTTGGTATTACTTGAAATCAGATGGTTCATATGCTCGCAATGCATGGCAAGGAAAC
    TACTATTTGAAATCAGATGGTAAAATGGCTAAAGGTGAATGGGTTTATGATGCCACCTAT
    CAAGCTTGGTATTACTTGAAATCAGATGGTTCATATGCTCGCAATGCATGGCAAGGAAAC
    TACTATTTGAAATCAGATGGTAAAATGGCTAAAGGTGAATGGGTTTATGATGCCACCTAT
    CAAGCTTGGTATTATTTGACATCAGATGGTTCTTATGCTTACAGTACATGGCAAGGAAAT
    TACTATCTAAAATCGGATGGTAAAATGGCTGTCAATGAATGGGTTGATGGTGGACGTTAT
    TATGTTGGCGCTGACGGAGTTTGGAAGGAAGGTCAAGCAAGTACAGCTTCTTCTAGTAAT
    GATAGCAATAGTGAATATTCTGCTGCTTTAGGAAAGGCAAAGACTTATAACTCACTATTC
    CATATGTCAAAAAAACGCATGTATAGACAATTAACTTCTGATTTTGATAAATTTTCAAAT
    GATGCAGCTCAATATGCCATTGATCATTTAGATGATTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    999

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: MYY_RS03660 [old locus tag: MYY_0712 ]
  • symbol: MYY_RS03660
  • description: N-acetylmuramoyl-L-alanine amidase family protein
  • length: 332
  • theoretical pI: 6.36908
  • theoretical MW: 37702.1
  • GRAVY: -0.78253

Function[edit | edit source]

  • TIGRFAM:
    glucan-binding repeat (TIGR04035; HMM-score: 41.4)
  • TheSEED: see MYY_0712
  • PFAM:
    Choline_binding (CL0694) Choline_bind_2; Choline-binding repeat (PF19085; HMM-score: 129.5)
    and 6 more
    Choline_bind_1; Putative cell wall binding repeat (PF01473; HMM-score: 77.8)
    Choline_bind_3; Choline-binding repeat (PF19127; HMM-score: 65.1)
    no clan defined Lipoprotein_Ltp; Host cell surface-exposed lipoprotein (PF07553; HMM-score: 65)
    Excalibur; Excalibur calcium-binding domain (PF05901; HMM-score: 46.7)
    PmbA_TldD_M; PmbA/TldA metallopeptidase central domain (PF19290; HMM-score: 13.9)
    Transthyretin (CL0287) DUF3823; Protein of unknown function (DUF3823) N-terminal domain (PF12866; HMM-score: 11.2)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • SignalP: Signal peptide SP(Sec/SPI) length 26 aa
    • SP(Sec/SPI): 0.997363
    • TAT(Tat/SPI): 0.001338
    • LIPO(Sec/SPII): 0.000744
    • Cleavage Site: CS pos: 26-27. VLA-EE. Pr: 0.9904
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_001042496 NCBI
  • UniProt:

Protein sequence[edit | edit source]

  • MNKRLFLKMSLVTLPILALFSQPVLAEENIHFSSCKEAWANGYSDIHEGEPGYSAKLDRDHDGVACELKNAPKGAFKAKQAATTQTDTTSSTASGWVKQDGSWYYFDGNGNLVKNAWQGNYYLKADGKMAQSEWIYDSSYQAWYYLKSDGSYARNAWQGNYYLKSDGKMAKGEWVYDATYQAWYYLKSDGSYARNAWQGNYYLKSDGKMAKGEWVYDATYQAWYYLTSDGSYAYSTWQGNYYLKSDGKMAVNEWVDGGRYYVGADGVWKEGQASTASSSNDSNSEYSAALGKAKTYNSLFHMSKKRMYRQLTSDFDKFSNDAAQYAIDHLDD

Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Expression data[edit | edit source]

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]

Javier Gutiérrez-Fernández, Malek Saleh, Martín Alcorlo, Alejandro Gómez-Mejía, David Pantoja-Uceda, Miguel A Treviño, Franziska Voß, Mohammed R Abdullah, Sergio Galán-Bartual, Jolien Seinen, Pedro A Sánchez-Murcia, Federico Gago, Marta Bruix, Sven Hammerschmidt, Juan A Hermoso
Modular Architecture and Unique Teichoic Acid Recognition Features of Choline-Binding Protein L (CbpL) Contributing to Pneumococcal Pathogenesis.
Sci Rep: 2016, 6;38094
[PubMed:27917891] [WorldCat.org] [DOI] (I e)

NCBI: 02-APR-2025

Summary[edit | edit source]

  • organism: Streptococcus pneumoniae ST556
  • locus tag: MYY_RS03660 [old locus tag: MYY_0712 ]
  • pan locus tag?: PNEUPAN001623000
  • symbol: MYY_RS03660
  • pan gene symbol?: cbpL
  • synonym:
  • product: N-acetylmuramoyl-L-alanine amidase family protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: MYY_RS03660 [old locus tag: MYY_0712 ]
  • symbol: MYY_RS03660
  • product: N-acetylmuramoyl-L-alanine amidase family protein
  • replicon: chromosome
  • strand: +
  • coordinates: 700782..701780
  • length: 999
  • essential: unknown

Accession numbers[edit | edit source]

  • Location: NC_017769 (700782..701780) NCBI
  • BioCyc: MYY_RS03660 BioCyc
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_0579 PneumoBrowse

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATGAATAAACGTCTATTTTTAAAAATGAGTCTGGTGACGTTGCCAATTTTAGCCTTGTTT
    TCACAACCAGTTTTGGCGGAAGAAAACATCCATTTTTCGAGCTGTAAGGAAGCTTGGGCG
    AATGGCTATTCGGATATTCACGAGGGAGAACCTGGTTATTCTGCCAAGTTAGACCGTGAT
    CATGATGGTGTGGCTTGCGAATTGAAAAATGCTCCTAAGGGTGCTTTTAAAGCAAAACAA
    GCGGCTACAACTCAAACTGATACAACTTCATCCACAGCAAGTGGTTGGGTTAAGCAGGAC
    GGTTCTTGGTACTATTTTGATGGAAATGGAAATCTAGTGAAAAATGCATGGCAGGGAAAC
    TATTACCTGAAAGCTGATGGTAAAATGGCACAGAGTGAATGGATTTATGACTCTTCTTAT
    CAAGCTTGGTATTACTTGAAATCAGATGGTTCATATGCTCGCAATGCATGGCAAGGAAAC
    TACTATTTGAAATCAGATGGTAAAATGGCTAAAGGTGAATGGGTTTATGATGCCACCTAT
    CAAGCTTGGTATTACTTGAAATCAGATGGTTCATATGCTCGCAATGCATGGCAAGGAAAC
    TACTATTTGAAATCAGATGGTAAAATGGCTAAAGGTGAATGGGTTTATGATGCCACCTAT
    CAAGCTTGGTATTATTTGACATCAGATGGTTCTTATGCTTACAGTACATGGCAAGGAAAT
    TACTATCTAAAATCGGATGGTAAAATGGCTGTCAATGAATGGGTTGATGGTGGACGTTAT
    TATGTTGGCGCTGACGGAGTTTGGAAGGAAGGTCAAGCAAGTACAGCTTCTTCTAGTAAT
    GATAGCAATAGTGAATATTCTGCTGCTTTAGGAAAGGCAAAGACTTATAACTCACTATTC
    CATATGTCAAAAAAACGCATGTATAGACAATTAACTTCTGATTTTGATAAATTTTCAAAT
    GATGCAGCTCAATATGCCATTGATCATTTAGATGATTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    999

This data comes from external databases and cannot be edited.

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: MYY_RS03660 [old locus tag: MYY_0712 ]
  • symbol: MYY_RS03660
  • description: N-acetylmuramoyl-L-alanine amidase family protein
  • length: 332
  • theoretical pI: 6.36908
  • theoretical MW: 37702.1
  • GRAVY: -0.78253

Function[edit | edit source]

  • TIGRFAM:
    glucan-binding repeat (TIGR04035; HMM-score: 41.4)
  • TheSEED: see MYY_0712
  • PFAM:
    Choline_binding (CL0694) Choline_bind_2; Choline-binding repeat (PF19085; HMM-score: 129.5)
    and 6 more
    Choline_bind_1; Putative cell wall binding repeat (PF01473; HMM-score: 77.8)
    Choline_bind_3; Choline-binding repeat (PF19127; HMM-score: 65.1)
    no clan defined Lipoprotein_Ltp; Host cell surface-exposed lipoprotein (PF07553; HMM-score: 65)
    Excalibur; Excalibur calcium-binding domain (PF05901; HMM-score: 46.7)
    PmbA_TldD_M; PmbA/TldA metallopeptidase central domain (PF19290; HMM-score: 13.9)
    Transthyretin (CL0287) DUF3823; Protein of unknown function (DUF3823) N-terminal domain (PF12866; HMM-score: 11.2)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • SignalP: Signal peptide SP(Sec/SPI) length 26 aa
    • SP(Sec/SPI): 0.997363
    • TAT(Tat/SPI): 0.001338
    • LIPO(Sec/SPII): 0.000744
    • Cleavage Site: CS pos: 26-27. VLA-EE. Pr: 0.9904
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_001042496 NCBI
  • UniProt:

Protein sequence[edit | edit source]

  • MNKRLFLKMSLVTLPILALFSQPVLAEENIHFSSCKEAWANGYSDIHEGEPGYSAKLDRDHDGVACELKNAPKGAFKAKQAATTQTDTTSSTASGWVKQDGSWYYFDGNGNLVKNAWQGNYYLKADGKMAQSEWIYDSSYQAWYYLKSDGSYARNAWQGNYYLKSDGKMAKGEWVYDATYQAWYYLKSDGSYARNAWQGNYYLKSDGKMAKGEWVYDATYQAWYYLTSDGSYAYSTWQGNYYLKSDGKMAVNEWVDGGRYYVGADGVWKEGQASTASSSNDSNSEYSAALGKAKTYNSLFHMSKKRMYRQLTSDFDKFSNDAAQYAIDHLDD

Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Expression data[edit | edit source]

Biological Material[edit | edit source]

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

Other Information[edit | edit source]

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]

Javier Gutiérrez-Fernández, Malek Saleh, Martín Alcorlo, Alejandro Gómez-Mejía, David Pantoja-Uceda, Miguel A Treviño, Franziska Voß, Mohammed R Abdullah, Sergio Galán-Bartual, Jolien Seinen, Pedro A Sánchez-Murcia, Federico Gago, Marta Bruix, Sven Hammerschmidt, Juan A Hermoso
Modular Architecture and Unique Teichoic Acid Recognition Features of Choline-Binding Protein L (CbpL) Contributing to Pneumococcal Pathogenesis.
Sci Rep: 2016, 6;38094
[PubMed:27917891] [WorldCat.org] [DOI] (I e)