type: CDS
locus tag: SPAP_1886 [new locus tag: SPAP_RS09360 ]
symbol: SPAP_1886
product: ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
replicon: chromosome
strand: -
coordinates: 1774603..1775670
length: 1068
essential: unknown

⊟Accession numbers[edit | edit source]

Location: CP002121 (1774603..1775670) NCBI
BioCyc: see SPAP_RS09360
MicrobesOnline:
PneumoBrowse for strain D39V: SPV_1668 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

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1021
ATGACAAAAGAAAAAAATGTAATTTTGACTGCTCGCGATATTGTCGTGGAATTTGACGTT
CGTGACAAAGTATTGACAGCCATTCGCGGCGTTTCCCTTGAACTAGTCGAAGGAGAAGTA
TTAGCCTTGGTAGGTGAGTCAGGATCAGGTAAATCTGTTTTGACAAAGACCTTCACAGGT
ATGCTCGAAGAAAATGGTCGCATTGCCCAAGGTAGTATTGACTACCGTGGTCAGGACTTG
ACAGCTTTATCTTCTCACAAGGATTGGGAACAAATTCGTGGTGCTAAGATTGCGACTATC
TTCCAGGACCCAATGACTAGTTTGGACCCCATTAAAACAATTGGTAGTCAGATTACAGAA
GTTATTGTAAAACACCAAGGAAAAACAGCTAAAGAAGCGAAAGAATTGGCCATTGACTAC
ATGAATAAGGTTGGCATTCCAGACGCAGATAGACGTTTTAATGAATACCCATTCCAATAT
TCTGGAGGAATGCGTCAACGTATCGTTATTGCTATTGCCCTTGCCTGCCGACCTGATGTC
TTGATCTGTGATGAGCCAACAACTGCCTTGGATGTAACTATTCAAGCTCAGATTATTGAT
TTGCTAAAATCTTTACAAAACGAGTATCATTTCACAACAATCTTTATTACCCACGACCTT
GGTGTGGTGGCAAGTATTGCGGATAAGGTAGCGGTTATGTATGCAGGGGAAATCGTTGAG
TATGGAACGGTTGAGGAAGTCTTCTATGCCCCTTGCCATCCATATACATGGAGTCTCTTG
TCTAGCTTGCCTCAGCTTGCTGATGATAAAGGGGATCTTTACTCAATCCCAGGAACACCT
CCGTCACTTTATACTGACCTGAAAGGGGATGCTTTTGCCTTGCGTTCTGACTACGCAATG
CAGATTGACTTCGAACAAAAAGCTCCTCAATTCTCAGTATCAGAGACACATTGGGCTAAA
ACTTGGCTTCTTCATGAGGATGCTCCAAAAGTAGAAAAACCAGCTGTGATTGCAAATCTC
CATGATAAGATCCGTGAAAAAATGGGATTTGCCCATCTGGCTGACTAG
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⊟Protein[edit | edit source]

⊟General[edit | edit source]

locus tag: SPAP_1886 [new locus tag: SPAP_RS09360 ]
symbol: SPAP_1886
description: ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
length: 355
theoretical pI: 4.86543
theoretical MW: 39392.8
GRAVY: -0.119437

⊟Function[edit | edit source]

⊞⊞TIGRFAM:
Metabolism Transport and binding proteins Cations and iron carrying compounds nickel import ATP-binding protein NikD (TIGR02770; HMM-score: 250.9)
and 74 more
Metabolism Transport and binding proteins Cations and iron carrying compounds nickel import ATP-binding protein NikE (TIGR02769; EC 3.6.3.24; HMM-score: 159.2)
Metabolism Transport and binding proteins Unknown substrate energy-coupling factor transporter ATPase (TIGR04521; EC 3.6.3.-; HMM-score: 151.9)
Metabolism Transport and binding proteins Amino acids, peptides and amines glycine betaine/L-proline transport ATP binding subunit (TIGR01186; HMM-score: 148.3)
Metabolism Transport and binding proteins Anions phosphate ABC transporter, ATP-binding protein (TIGR00972; EC 3.6.3.27; HMM-score: 146.6)
D-methionine ABC transporter, ATP-binding protein (TIGR02314; EC 3.6.3.-; HMM-score: 133.9)
Metabolism Transport and binding proteins Amino acids, peptides and amines putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TIGR03265; HMM-score: 131.6)
ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA (TIGR03005; HMM-score: 131.3)
Metabolism Transport and binding proteins Anions sulfate ABC transporter, ATP-binding protein (TIGR00968; EC 3.6.3.25; HMM-score: 125.5)
Metabolism Transport and binding proteins Unknown substrate energy-coupling factor transporter ATPase (TIGR04520; EC 3.6.3.-; HMM-score: 123.8)
Metabolism Central intermediary metabolism Phosphorus compounds phosphonate C-P lyase system protein PhnK (TIGR02323; HMM-score: 120.4)
Metabolism Transport and binding proteins Amino acids, peptides and amines choline ABC transporter, ATP-binding protein (TIGR03415; HMM-score: 118.6)
2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT (TIGR03258; HMM-score: 118.2)
Genetic information processing Protein fate Protein and peptide secretion and trafficking lipoprotein releasing system, ATP-binding protein (TIGR02211; EC 3.6.3.-; HMM-score: 116.6)
Metabolism Transport and binding proteins Anions phosphonate ABC transporter, ATP-binding protein (TIGR02315; EC 3.6.3.28; HMM-score: 114.9)
Metabolism Transport and binding proteins Other daunorubicin resistance ABC transporter, ATP-binding protein (TIGR01188; HMM-score: 108.2)
ABC exporter ATP-binding subunit, DevA family (TIGR02982; HMM-score: 106.3)
Cellular processes Cellular processes Toxin production and resistance putative bacteriocin export ABC transporter, lactococcin 972 group (TIGR03608; HMM-score: 103.8)
Metabolism Transport and binding proteins Unknown substrate putative bacteriocin export ABC transporter, lactococcin 972 group (TIGR03608; HMM-score: 103.8)
proposed F420-0 ABC transporter, ATP-binding protein (TIGR03873; HMM-score: 100.1)
Metabolism Transport and binding proteins Amino acids, peptides and amines polyamine ABC transporter, ATP-binding protein (TIGR01187; EC 3.6.3.31; HMM-score: 99.2)
Cellular processes Cellular processes Cell division cell division ATP-binding protein FtsE (TIGR02673; HMM-score: 98.9)
Cellular processes Cellular processes Biosynthesis of natural products NHLM bacteriocin system ABC transporter, ATP-binding protein (TIGR03797; HMM-score: 97.8)
Metabolism Transport and binding proteins Amino acids, peptides and amines NHLM bacteriocin system ABC transporter, ATP-binding protein (TIGR03797; HMM-score: 97.8)
Metabolism Transport and binding proteins Anions nitrate ABC transporter, ATP-binding proteins C and D (TIGR01184; HMM-score: 94.7)
Metabolism Transport and binding proteins Other nitrate ABC transporter, ATP-binding proteins C and D (TIGR01184; HMM-score: 94.7)
Metabolism Transport and binding proteins Anions molybdate ABC transporter, ATP-binding protein (TIGR02142; EC 3.6.3.29; HMM-score: 91.4)
Metabolism Energy metabolism Methanogenesis methyl coenzyme M reductase system, component A2 (TIGR03269; HMM-score: 89.6)
Cellular processes Cellular processes Pathogenesis type I secretion system ATPase (TIGR03375; HMM-score: 87.6)
Genetic information processing Protein fate Protein and peptide secretion and trafficking type I secretion system ATPase (TIGR03375; HMM-score: 87.6)
Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides lipid A export permease/ATP-binding protein MsbA (TIGR02203; HMM-score: 85.9)
Metabolism Transport and binding proteins Other lipid A export permease/ATP-binding protein MsbA (TIGR02203; HMM-score: 85.9)
Metabolism Transport and binding proteins Cations and iron carrying compounds cobalt ABC transporter, ATP-binding protein (TIGR01166; HMM-score: 85.5)
thiol reductant ABC exporter, CydD subunit (TIGR02857; HMM-score: 84.9)
Metabolism Transport and binding proteins Amino acids, peptides and amines urea ABC transporter, ATP-binding protein UrtD (TIGR03411; HMM-score: 84.9)
Cellular processes Cellular processes Biosynthesis of natural products NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein (TIGR03796; HMM-score: 84.2)
Metabolism Transport and binding proteins Amino acids, peptides and amines NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein (TIGR03796; HMM-score: 84.2)
Metabolism Transport and binding proteins Amino acids, peptides and amines urea ABC transporter, ATP-binding protein UrtE (TIGR03410; HMM-score: 83)
ABC transporter, permease/ATP-binding protein (TIGR02204; HMM-score: 81.2)
Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids D-xylose ABC transporter, ATP-binding protein (TIGR02633; EC 3.6.3.17; HMM-score: 81.1)
Genetic information processing Protein fate Protein and peptide secretion and trafficking type I secretion system ATPase (TIGR01842; HMM-score: 79.9)
Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system (TIGR03864; HMM-score: 79.6)
thiol reductant ABC exporter, CydC subunit (TIGR02868; HMM-score: 79)
Genetic information processing Protein fate Protein and peptide secretion and trafficking ABC-type bacteriocin transporter (TIGR01193; HMM-score: 78.2)
Genetic information processing Protein fate Protein modification and repair ABC-type bacteriocin transporter (TIGR01193; HMM-score: 78.2)
Metabolism Transport and binding proteins Other ABC-type bacteriocin transporter (TIGR01193; HMM-score: 78.2)
Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Other FeS assembly ATPase SufC (TIGR01978; HMM-score: 77.5)
Metabolism Transport and binding proteins Other antigen peptide transporter 2 (TIGR00958; HMM-score: 75.9)
phosphonate C-P lyase system protein PhnL (TIGR02324; HMM-score: 75.5)
Genetic information processing Protein fate Protein and peptide secretion and trafficking type I secretion system ATPase (TIGR01846; HMM-score: 75.3)
lantibiotic protection ABC transporter, ATP-binding subunit (TIGR03740; HMM-score: 75.2)
Metabolism Transport and binding proteins Other thiamine ABC transporter, ATP-binding protein (TIGR01277; EC 3.6.3.-; HMM-score: 71.6)
Metabolism Transport and binding proteins Unknown substrate anchored repeat-type ABC transporter, ATP-binding subunit (TIGR03771; HMM-score: 70.8)
Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids glucan exporter ATP-binding protein (TIGR01192; EC 3.6.3.42; HMM-score: 67.2)
Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides LPS export ABC transporter ATP-binding protein (TIGR04406; HMM-score: 66.5)
Metabolism Transport and binding proteins Other LPS export ABC transporter ATP-binding protein (TIGR04406; HMM-score: 66.5)
Metabolism Transport and binding proteins Other pigment precursor permease (TIGR00955; HMM-score: 65.3)
gliding motility-associated ABC transporter ATP-binding subunit GldA (TIGR03522; HMM-score: 62.6)
Metabolism Transport and binding proteins Amino acids, peptides and amines oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain (TIGR01727; HMM-score: 55.5)
ATP-binding cassette protein, ChvD family (TIGR03719; HMM-score: 52.8)
Cellular processes Cellular processes Other nodulation ABC transporter NodI (TIGR01288; HMM-score: 50.2)
Metabolism Transport and binding proteins Other nodulation ABC transporter NodI (TIGR01288; HMM-score: 50.2)
Genetic information processing Protein fate Protein and peptide secretion and trafficking heme ABC exporter, ATP-binding protein CcmA (TIGR01189; EC 3.6.3.41; HMM-score: 45.1)
Metabolism Transport and binding proteins Other heme ABC exporter, ATP-binding protein CcmA (TIGR01189; EC 3.6.3.41; HMM-score: 45.1)
Metabolism Transport and binding proteins Other pleiotropic drug resistance family protein (TIGR00956; HMM-score: 44.9)
Metabolism Transport and binding proteins Other multi drug resistance-associated protein (MRP) (TIGR00957; HMM-score: 33.6)
Genetic information processing DNA metabolism DNA replication, recombination, and repair excinuclease ABC subunit A (TIGR00630; EC 3.1.25.-; HMM-score: 32)
Metabolism Transport and binding proteins Anions cystic fibrosis transmembrane conductor regulator (CFTR) (TIGR01271; EC 3.6.3.49; HMM-score: 31.7)
Metabolism Transport and binding proteins Other rim ABC transporter (TIGR01257; HMM-score: 30.9)
Metabolism Transport and binding proteins Amino acids, peptides and amines cyclic peptide transporter (TIGR01194; HMM-score: 23.2)
Metabolism Transport and binding proteins Other cyclic peptide transporter (TIGR01194; HMM-score: 23.2)
Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids peroxysomal long chain fatty acyl transporter (TIGR00954; HMM-score: 17.8)
Metabolism Central intermediary metabolism Sulfur metabolism adenylyl-sulfate kinase (TIGR00455; EC 2.7.1.25; HMM-score: 12.9)
Metabolism Energy metabolism Glycolysis/gluconeogenesis phosphoenolpyruvate synthase (TIGR01418; EC 2.7.9.2; HMM-score: 11.2)
rad50 (TIGR00606; HMM-score: 8.7)
TheSEED :
- Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1)
Membrane Transport ABC transporters ABC transporter oligopeptide (TC 3.A.1.5.1) Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1)
⊞⊞PFAM:
P-loop_NTPase (CL0023) ABC_tran; ABC transporter (PF00005; HMM-score: 102.5)
and 12 more
no clan defined oligo_HPY; Oligopeptide/dipeptide transporter, C-terminal region (PF08352; HMM-score: 43)
P-loop_NTPase (CL0023) AAA_21; AAA domain, putative AbiEii toxin, Type IV TA system (PF13304; HMM-score: 34.6)
AAA_22; AAA domain (PF13401; HMM-score: 27.6)
TniB; Bacterial TniB protein (PF05621; HMM-score: 20.8)
AAA_16; AAA ATPase domain (PF13191; HMM-score: 19.7)
SMC_N; RecF/RecN/SMC N terminal domain (PF02463; HMM-score: 19.4)
AAA_5; AAA domain (dynein-related subfamily) (PF07728; HMM-score: 16)
TsaE; Threonylcarbamoyl adenosine biosynthesis protein TsaE (PF02367; HMM-score: 13.7)
RsgA_GTPase; RsgA GTPase (PF03193; HMM-score: 13.5)
ATPase; KaiC (PF06745; HMM-score: 13.4)
AAA_29; P-loop containing region of AAA domain (PF13555; HMM-score: 13)
RNA_helicase; RNA helicase (PF00910; HMM-score: 12.6)

⊟Structure, modifications & cofactors[edit | edit source]

domains:
modifications:
cofactors:
effectors:

⊟Localization[edit | edit source]

⊞⊞
PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0.04
- Cytoplasmic Membrane Score: 9.96
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 0
⊞⊞
SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.004986
- TAT(Tat/SPI): 0.001137
- LIPO(Sec/SPII): 0.000489
predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

GI:
RefSeq: ADM85469 NCBI
UniProt:

⊟Protein sequence[edit | edit source]

MTKEKNVILTARDIVVEFDVRDKVLTAIRGVSLELVEGEVLALVGESGSGKSVLTKTFTGMLEENGRIAQGSIDYRGQDLTALSSHKDWEQIRGAKIATIFQDPMTSLDPIKTIGSQITEVIVKHQGKTAKEAKELAIDYMNKVGIPDADRRFNEYPFQYSGGMRQRIVIAIALACRPDVLICDEPTTALDVTIQAQIIDLLKSLQNEYHFTTIFITHDLGVVASIADKVAVMYAGEIVEYGTVEEVFYAPCHPYTWSLLSSLPQLADDKGDLYSIPGTPPSLYTDLKGDAFALRSDYAMQIDFEQKAPQFSVSETHWAKTWLLHEDAPKVEKPAVIANLHDKIREKMGFAHLAD

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