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From PneumoWiki
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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 05-OCT-2017

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⊟Summary[edit | edit source]

Contents

  • 1 Summary
  • 2 Genome View
  • 3 Gene
    • 3.1 General
    • 3.2 Accession numbers
    • 3.3 Phenotype
    • 3.4 DNA sequence
  • 4 Protein
    • 4.1 General
    • 4.2 Function
    • 4.3 Structure, modifications & cofactors
    • 4.4 Localization
    • 4.5 Accession numbers
    • 4.6 Protein sequence
    • 4.7 Experimental data
  • 5 Expression & Regulation
    • 5.1 Operon
    • 5.2 Regulation
    • 5.3 Expression data
  • 6 Biological Material
    • 6.1 Mutants
    • 6.2 Expression vector
    • 6.3 lacZ fusion
    • 6.4 GFP fusion
    • 6.5 two-hybrid system
    • 6.6 FLAG-tag construct
    • 6.7 Antibody
  • 7 Other Information
  • 8 Literature
    • 8.1 References
    • 8.2 Relevant publications
  • organism: Streptococcus pneumoniae MDRSPN001
  • locus tag: MDRSPN_01256 [new locus tag: MDRSPN_RS06615 ]
  • pan locus tag?: PNEUPAN002865000
  • symbol: MDRSPN_01256
  • pan gene symbol?: —
  • synonym:
  • product: uncharacterized protein family UPF0213

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: MDRSPN_01256 [new locus tag: MDRSPN_RS06615 ]
  • symbol: MDRSPN_01256
  • product: uncharacterized protein family UPF0213
  • replicon: chromosome
  • strand: -
  • coordinates: 1275836..1276135
  • length: 300
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: AP018391 (1275836..1276135) NCBI
  • BioCyc:
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_1364 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    ATGGATCATAAGGCTTATATGTACGTTCTGGAGTGTCGTGATGGATCCTACTATATAGGC
    TATACGACTGATGTGAGAAGACGCCTCGCTATCCACAATAGTGGGAAGGGAGCCAAATAT
    ACACGAGCACGCTTGCCAGTCAAACTTATCTATGCTCAAGGTTTTGCCAGTAAGGAAGAA
    GCCATGTCGGCTGAAGCTCTTCTCAAGCGTAAGAAGAGGCCACAGAAGGAAGAATTTTTA
    TCTGAAAATCAAGATAGAAATTTACTCAGTTATTTTGAAGAATCGTGGGGAGTCCTTTGA
    60
    120
    180
    240
    300

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: MDRSPN_01256 [new locus tag: MDRSPN_RS06615 ]
  • symbol: MDRSPN_01256
  • description: uncharacterized protein family UPF0213
  • length: 99
  • theoretical pI: 9.73219
  • theoretical MW: 11587.2
  • GRAVY: -0.727273

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • ⊞PFAM:
    GIY-YIG (CL0418) GIY-YIG; GIY-YIG catalytic domain (PF01541; HMM-score: 66.9)
    and 2 more
    T5orf172; T5orf172 domain (PF10544; HMM-score: 20.7)
    MBD-like (CL0081) Arm-DNA-bind_4; Arm DNA-binding domain (PF14657; HMM-score: 11.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.005943
    • TAT(Tat/SPI): 0.002426
    • LIPO(Sec/SPII): 0.003197
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: BBA59455 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MDHKAYMYVLECRDGSYYIGYTTDVRRRLAIHNSGKGAKYTRARLPVKLIYAQGFASKEEAMSAEALLKRKKRPQKEEFLSENQDRNLLSYFEESWGVL

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V: SPV_1364 PneumoExpress

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=MDRSPN_01256&oldid=108694"
  • This page was last edited on 20 January 2022, at 17:14.
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