From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 07-FEB-2021

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae AP200
  • locus tag: SPAP_RS08025 [old locus tag: SPAP_1627 ]
  • pan locus tag?: PNEUPAN002989000
  • symbol: SPAP_RS08025
  • pan gene symbol?: gtrB
  • synonym:
  • product: glycosyltransferase family 2 protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPAP_RS08025 [old locus tag: SPAP_1627 ]
  • symbol: SPAP_RS08025
  • product: glycosyltransferase family 2 protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1528188..1529153
  • length: 966
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_014494 (1528188..1529153) NCBI
  • BioCyc: SPAP_RS08025 BioCyc
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_1431 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATGATGATTTCAATCATCGTCCCTTGTTTAAACGAAGAGGAAGTACTTCCTCTTTTTTAT
    CAAGCTCTGGAAGCTTTACTTCCAGATTTGGAAACAGAAATCGAGTATGTCTTTGTCGAT
    GATGGATCGAGTGATGGGACCTTGGAACTCTTAAAGGCCTATCGGGAGCAAAATCCGGCA
    GCCCATTATATTTCTTTCTCGCGAAATTTTGGCAAAGAAGCAGCCCTTTATGCAGGCTTG
    CAATATGCGACAGGAGATTTGGTGGTGGTGATGGATGCAGACCTCCAAGATCCTCCTAGT
    ATGTTGTTTGAGATGAAAAATGTACTAGACAAAAATGTAGACTTGGACTGCGTTGGGACA
    CGGAGAACTAGTCGGGAGGGAGAACCCTTCTTTCGCAGTTTCTGTGCTGTTCTCTTTTAT
    CGCCTCATGCAAAAAATCAGCCCAGTAGCTCTGCCGTCGGGTGTCCGTGATTTTCGTATG
    ATGAGAAGGTCTGTGGTCGATGCCATTTTAAGCTTGACTGAGTCCAATCGTTTTTCAAAG
    GGGCTCTTCGCCTGGGTGGGTTTCAAAACCTACTATTTGGACTATCCAAATGTCGAAAGG
    CAGGCTGGCAAGACCAGTTGGAGTTTTAGGCAACTCTTTTTCTACTCCATTGAAGGGATT
    ATTAATTTTTCAGATTTTCCCTTGATTATAGCCTTTGTAGCTGGTCTCCTATCTTGTTTT
    CTTTCTCTGCTGATGACCTTTTTTGTTGTGGTTCGGACCCTCATTTTGGGCAATCCGACA
    TCTGGTTGGACCTCTCTGATGGCTGTTATTCTCTTTCTTGGAGGCATTCAACTCTTGACC
    ATTGGGATTCTCGGAAAGTATATCAGTAAGATTTATTTAGAGACTAAAAAAAGACCACTT
    TATCTTATCAAAGAAAAAAGTGACCTTCCTGATTTTACAGAAAAAAATAAAGTGAAAAGA
    CTATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    966

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPAP_RS08025 [old locus tag: SPAP_1627 ]
  • symbol: SPAP_RS08025
  • description: glycosyltransferase family 2 protein
  • length: 321
  • theoretical pI: 5.52216
  • theoretical MW: 36516.4
  • GRAVY: 0.2081

⊟Function[edit | edit source]

  • ⊞TIGRFAM:
    poly-beta-1,6 N-acetyl-D-glucosamine synthase (TIGR03937; EC 2.4.1.-; HMM-score: 54.1)
    Unknown function Enzymes of unknown specificity transferase 2, rSAM/selenodomain-associated (TIGR04283; EC 2.-.-.-; HMM-score: 46.2)
    and 8 more
    mycofactocin system glycosyltransferase (TIGR03965; HMM-score: 28.9)
    chitooligosaccharide synthase NodC (TIGR04242; EC 2.4.1.-; HMM-score: 27.9)
    glycosyltransferase, TIGR04182 family (TIGR04182; HMM-score: 23.3)
    colanic acid biosynthesis glycosyltransferase WcaE (TIGR04009; EC 2.4.-.-; HMM-score: 22.1)
    putative glycosyltransferase, exosortase G-associated (TIGR03111; HMM-score: 19.8)
    hopene-associated glycosyltransferase HpnB (TIGR03469; HMM-score: 14.7)
    Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides rhamnosyltransferase (TIGR01556; EC 2.4.1.-; HMM-score: 12.4)
    Cellular processes Cellular processes DNA transformation DNA protecting protein DprA (TIGR00732; HMM-score: 11.6)
  • TheSEED: see SPAP_1627
  • ⊞PFAM:
    GT-A (CL0110) Glycos_transf_2; Glycosyl transferase family 2 (PF00535; HMM-score: 117.2)
    and 5 more
    Glyco_tranf_2_3; Glycosyltransferase like family 2 (PF13641; HMM-score: 46.2)
    Glyco_tranf_2_2; Glycosyltransferase like family 2 (PF10111; HMM-score: 26.8)
    Glyco_tranf_2_4; Glycosyl transferase family 2 (PF13704; HMM-score: 19)
    C_Lectin (CL0056) UL45; UL45 protein, carbohydrate-binding C-type lectin-like (PF05473; HMM-score: 12.8)
    no clan defined Phage_holin_3_6; Putative Actinobacterial Holin-X, holin superfamily III (PF07332; HMM-score: 10.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.01
    • Cytoplasmic Membrane Score: 9.99
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 2
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.005182
    • TAT(Tat/SPI): 0.000163
    • LIPO(Sec/SPII): 0.000453
  • predicted transmembrane helices (TMHMM): 2

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_001813417 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MMISIIVPCLNEEEVLPLFYQALEALLPDLETEIEYVFVDDGSSDGTLELLKAYREQNPAAHYISFSRNFGKEAALYAGLQYATGDLVVVMDADLQDPPSMLFEMKNVLDKNVDLDCVGTRRTSREGEPFFRSFCAVLFYRLMQKISPVALPSGVRDFRMMRRSVVDAILSLTESNRFSKGLFAWVGFKTYYLDYPNVERQAGKTSWSFRQLFFYSIEGIINFSDFPLIIAFVAGLLSCFLSLLMTFFVVVRTLILGNPTSGWTSLMAVILFLGGIQLLTIGILGKYISKIYLETKKRPLYLIKEKSDLPDFTEKNKVKRL

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SPAP_RS08025&oldid=41557"