⊟Summary[edit | edit source]

PangenomeTIGR4

serotype 4

D39

serotype 2

D39V

serotype 2

Hungary19A-6

serotype 19A

EF3030

serotype 19F

670-6B

serotype 6B

6A-10

serotype 6A

70585

serotype 5

A026

serotype 19F

A66

serotype 3

AP200

serotype 11A

ASP0581

serotype 12F

ATCC 49619

serotype 19F

ATCC 700669

serotype 23F

BVJ1JL

serotype 1

CGSP14

serotype 14

G54

serotype 19F

HU-OH

serotype 3

Hu15

serotype 19A

Hu17

serotype 19A

INV104

serotype 1

INV200

serotype 14

JJA

serotype 14

MDRSPN001

serotype 19F

NCTC7466

serotype 2

NU83127

serotype 4

OXC141

serotype 3

P1031

serotype 1

R6

serotype 2

SP49

serotype 19A

SPN032672

serotype 1

SPN034156

serotype 3

SPN034183

serotype 3

SPN994038

serotype 3

SPN994039

serotype 3

SPNA45

serotype 3

ST556

serotype 19F

TCH8431/19A

serotype 19A

Taiwan19F-14

serotype 19F

Xen35

serotype 4

gamPNI0373

serotype 1

NCBI: 26-AUG-2017

⊟Summary

• organism: Streptococcus pneumoniae OXC141
locus tag: SPNOXC15720 [new locus tag: SPNOXC_RS08520 ]
pan locus tag^?: PNEUPAN003279000
symbol: SPNOXC15720
pan gene symbol^?: yteP_3
• synonym:
• product: binding-protein-dependent transport system membrane protein

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: SPNOXC15720 [new locus tag: SPNOXC_RS08520 ]
• symbol: SPNOXC15720
• product: binding-protein-dependent transport system membrane protein
• replicon: chromosome
• strand: -
• coordinates: 1596276..1597193
• length: 918
• essential: unknown

⊟Accession numbers

• Location: FQ312027 (1596276..1597193) NCBI
• BioCyc: see SPNOXC_RS08520
• MicrobesOnline:
• PneumoBrowse for strain D39V:

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

• 1
  61
  121
  181
  241
  301
  361
  421
  481
  541
  601
  661
  721
  781
  841
  901
  
  ATGAATAGCAAAGCGAAGCAAGTTTCTCTTTGGGAAAGAATCAAGAAACAAAAACTCTTG
  TTATTGATGACTGTCCCCGGTTTAGTTTTAACCTTTATCTTTAAATACATCCCTATGTAT
  GGGGTTTTAATCGCATTTAAAGATTACAATCCTTTAAAAGGAATTTTAGGGAGTGATTGG
  ATTGGTTTTTCTGAGTTTACAAAATTCATATCCTCTCCCAACTTTGGTATCTTGTTAGCC
  AACACATTAAAATTAAGTATCTATGGTTTATTGCTTGGCTTTTTACCACCAATCATTCTT
  GCTATTATGCTCAATCAACTCTTGAGTGAAAAAGTCAAAAAACGAATTCAGCTCATTTTA
  TACGCACCAAACTTTATCTCAGTTGTTGTTATTGTCGGTATGATTTTCCTCTTCTTTTCA
  GTGGGAGGACCAATCAACAATTTTCTTTCTATGTTTGGAATGAAGGCTGACTTCTTGACA
  AATCCAGACTTCTTTAGACCTTTATACATCTTTAGTGGTATCTGGCAAGGAATGGGCTGG
  GCTTCAACGCTCTACACGGCAACATTGGTAAATGTAGATCCAGCCTTAGTAGAAGCAGCC
  CGACTGGATGGAGCCAATATCTTCCAACGAATCTGGCACATTGATATTCCAGCTCTTAAG
  CCTATTATGGTTATCCAATTTGTTTTAGCTGCAGGTGGAATTATGAATGTCGGATATGAA
  AAAGCATTCTTGATGCAGACATCGTTAAATTTGCCAACTTCTGAAATTATCTCGACATAT
  GTCTATAAAGTTGGTCTTGTATCAGGAGACTATTCTTACTCAACAGCGGTTGGTTTGTTT
  AATGCAGTGATTAACGTAGTATTGCTTGTTGCAGTTAACCAAATCGTTAAACGCATGAAT
  AATGGTGAAGGAATTTAA
  60
  120
  180
  240
  300
  360
  420
  480
  540
  600
  660
  720
  780
  840
  900
  918
  

⊟Protein

⊟General

• locus tag: SPNOXC15720 [new locus tag: SPNOXC_RS08520 ]
• symbol: SPNOXC15720
• description: binding-protein-dependent transport system membrane protein
• length: 305
• theoretical pI: 10.0205
• theoretical MW: 33917.3
• GRAVY: 0.670492

⊟Function

• ⊞⊞TIGRFAM:
  NifC-like ABC-type porter (TIGR01581; HMM-score: 25.3)
  Metabolism Transport and binding proteins Anions sulfate ABC transporter, permease protein CysT (TIGR02139; HMM-score: 21.7)
  and 4 more
  Metabolism Transport and binding proteins Anions sulfate ABC transporter, permease protein (TIGR00969; HMM-score: 19.9)
  Metabolism Transport and binding proteins Anions phosphonate ABC transporter, permease protein PhnE (TIGR01097; HMM-score: 17.9)
  Metabolism Transport and binding proteins Anions molybdate ABC transporter, permease protein (TIGR02141; HMM-score: 16)
  Metabolism Transport and binding proteins Anions phosphate ABC transporter, permease protein PstC (TIGR02138; HMM-score: 11.6)
• TheSEED  :
  • Predicted fructosides ABC transporter, permease protein BfrE
  Carbohydrates Di- and oligosaccharides Fructooligosaccharides(FOS) and Raffinose Utilization  Multiple sugar ABC transporter, membrane-spanning permease protein MsmF
• ⊞⊞PFAM:
  BPD_transp_1 (CL0404) BPD_transp_1; Binding-protein-dependent transport system inner membrane component (PF00528; HMM-score: 51.4)
  and 1 more
  no clan defined DUF6264; Family of unknown function (DUF6264) (PF19779; HMM-score: 14.7)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• ⊞⊞PSORTb: Cytoplasmic Membrane
  • Cytoplasmic Score: 0
  • Cytoplasmic Membrane Score: 10
  • Cellwall Score: 0
  • Extracellular Score: 0
  • Internal Helices: 4
• ⊞⊞SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.015537
  • TAT(Tat/SPI): 0.000247
  • LIPO(Sec/SPII): 0.002258
• predicted transmembrane helices (TMHMM): 6

⊟Accession numbers

• GI:
• RefSeq: CBW33224 NCBI
• UniProt:

⊟Protein sequence

• MNSKAKQVSLWERIKKQKLLLLMTVPGLVLTFIFKYIPMYGVLIAFKDYNPLKGILGSDWIGFSEFTKFISSPNFGILLANTLKLSIYGLLLGFLPPIILAIMLNQLLSEKVKKRIQLILYAPNFISVVVIVGMIFLFFSVGGPINNFLSMFGMKADFLTNPDFFRPLYIFSGIWQGMGWASTLYTATLVNVDPALVEAARLDGANIFQRIWHIDIPALKPIMVIQFVLAAGGIMNVGYEKAFLMQTSLNLPTSEIISTYVYKVGLVSGDYSYSTAVGLFNAVINVVLLVAVNQIVKRMNNGEGI

⊟Experimental data

• protein localization:
• interaction partners:

⊟Expression & Regulation

⊟Operon

⊟Regulation

• data available for TIGR4

⊟Expression data

• PneumoExpress for strain D39V:

⊞Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊞Other Information

You are kindly invited to share additional interesting facts.

⊟Literature

⊟References

⊟Relevant publications