From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SP670_1702 [new locus tag: SP670_RS08430 ]
  • symbol: SP670_1702
  • product: PTS system, IIC component
  • replicon: chromosome
  • strand: -
  • coordinates: 1584029..1585114
  • length: 1086
  • essential: unknown

Accession numbers[edit | edit source]

  • Location: CP002176 (1584029..1585114) NCBI
  • BioCyc: see SP670_RS08430
  • MicrobesOnline:
  • PneumoBrowse for strain D39V:

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    ATGTTGAAACACTTAAACTTAAAAGGTCACTTATTGACAGCCATTTCCTATATGATTCCA
    ATTGTTTGTGGTGCAGGATTCTTAGTTGCCATTGGTTTAGCAATGGGGGGTGGTGTTCCT
    GACGCTCTTGTAGCAGGAAAATTCACTATCTGGGATGCTTTAGCAACTATGGGTGGTAAA
    GCCCTTGGTCTCTTGCCAGTTGTTATTGCTACAGGTTTGTCTTACTCGATTGCTGGTAAA
    CCAGGGATTGCACCAGGTTTTGTTGTTGGTCTAATTGCCAATTCTGTTGGTTCAGGGTTT
    ATCGGTGGTATCTTGGGAGGTTATATAGCTGGTTTCTTGGTTCAAGCGATTGTTAAAAAG
    GTCAAAGTACCAAACTGGATTAAAGGTTTAATGCCAACCTTGATTATTCCTTTTGTAGCC
    TCTTTGGTAAGTAGTTTGATTATGATTTATATTATTGGAGCGCCTATCGCAGCCTTTACC
    AACTGGTTGACGAACTTATTACAAAGCTTGGGAAGTGCTTCAAATGGTTTGATGGGGGCA
    GTTATTGGAGTTCTCAGTGCTGTTGACTTTGGTGGCCCACTTAATAAAACAGTCTATGCG
    TTTGTGTTGACTTTACAGGCTGAAGGTGTGAAAGAACCATTGACTGCTTTGCAATTGGTG
    AATACTGCTACACCAGTTGGATTTGGATTGGCCTATTTTATCGCGAAATTACTCAAAAAA
    AATATCTATACTCAAGAGGAAATCGAAACATTGAAATCGGCTGTTCCTATGGGGATTGTC
    AATATTGTTGAAGGTGTAATTCCGATTGTTATGAATAACTTGGTTCCAGGTCTCATTGCA
    ACAGGTATCGGTGGTGCTGTTGGTGGTGCTGTTTCTTTGACAATGGGTGCTGATTCTGCC
    GTGCCATTTGGTGGAGTGCTTATGTTACCAACCATGACTCGTCCAGTAGCTGGTATTTGT
    GCTTTGTTAGCCAACATTGTAGTCACAGGACTTGTCTACGCGATTTTGAAAAAACCAATA
    AAACATACAGAACCAGTTATGACTGTTGAAGAAGAGATTGATTTGTCAGATATTGAAATT
    TTGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1086

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SP670_1702 [new locus tag: SP670_RS08430 ]
  • symbol: SP670_1702
  • description: PTS system, IIC component
  • length: 361
  • theoretical pI: 8.61982
  • theoretical MW: 36995.2
  • GRAVY: 0.960942

Function[edit | edit source]

  • TIGRFAM:
    PTS system, Fru family, IIC component (TIGR01427; HMM-score: 214.1)
    and 1 more
    PTS system, sucrose-specific IIBC component (TIGR01996; EC 2.7.1.69; HMM-score: 18.2)
  • TheSEED  :
    • PTS system, fructose-specific IIC component
    Carbohydrates Monosaccharides Fructose utilization  PTS system, fructose-specific IIC component
  • PFAM:
    PTS_EIIC (CL0493) PTS_EIIC; Phosphotransferase system, EIIC (PF02378; HMM-score: 29.3)
    and 1 more
    Viral_Gag (CL0148) Gag_spuma; Spumavirus gag protein (PF03276; HMM-score: 6.6)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 8
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.093174
    • TAT(Tat/SPI): 0.00676
    • LIPO(Sec/SPII): 0.069402
  • predicted transmembrane helices (TMHMM): 8

Accession numbers[edit | edit source]

  • GI:
  • RefSeq: ADM91758 NCBI
  • UniProt:

Protein sequence[edit | edit source]

  • MLKHLNLKGHLLTAISYMIPIVCGAGFLVAIGLAMGGGVPDALVAGKFTIWDALATMGGKALGLLPVVIATGLSYSIAGKPGIAPGFVVGLIANSVGSGFIGGILGGYIAGFLVQAIVKKVKVPNWIKGLMPTLIIPFVASLVSSLIMIYIIGAPIAAFTNWLTNLLQSLGSASNGLMGAVIGVLSAVDFGGPLNKTVYAFVLTLQAEGVKEPLTALQLVNTATPVGFGLAYFIAKLLKKNIYTQEEIETLKSAVPMGIVNIVEGVIPIVMNNLVPGLIATGIGGAVGGAVSLTMGADSAVPFGGVLMLPTMTRPVAGICALLANIVVTGLVYAILKKPIKHTEPVMTVEEEIDLSDIEIL

Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]

NCBI: 31-JAN-2014

Summary[edit | edit source]

  • organism: Streptococcus pneumoniae 670-6B
  • locus tag: SP670_1702 [new locus tag: SP670_RS08430 ]
  • pan locus tag?: PNEUPAN003008000
  • symbol: SP670_1702
  • pan gene symbol?: fruA_2
  • synonym:
  • product: PTS system, IIC component

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SP670_1702 [new locus tag: SP670_RS08430 ]
  • symbol: SP670_1702
  • product: PTS system, IIC component
  • replicon: chromosome
  • strand: -
  • coordinates: 1584029..1585114
  • length: 1086
  • essential: unknown

Accession numbers[edit | edit source]

  • Location: CP002176 (1584029..1585114) NCBI
  • BioCyc: see SP670_RS08430
  • MicrobesOnline:
  • PneumoBrowse for strain D39V:

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    ATGTTGAAACACTTAAACTTAAAAGGTCACTTATTGACAGCCATTTCCTATATGATTCCA
    ATTGTTTGTGGTGCAGGATTCTTAGTTGCCATTGGTTTAGCAATGGGGGGTGGTGTTCCT
    GACGCTCTTGTAGCAGGAAAATTCACTATCTGGGATGCTTTAGCAACTATGGGTGGTAAA
    GCCCTTGGTCTCTTGCCAGTTGTTATTGCTACAGGTTTGTCTTACTCGATTGCTGGTAAA
    CCAGGGATTGCACCAGGTTTTGTTGTTGGTCTAATTGCCAATTCTGTTGGTTCAGGGTTT
    ATCGGTGGTATCTTGGGAGGTTATATAGCTGGTTTCTTGGTTCAAGCGATTGTTAAAAAG
    GTCAAAGTACCAAACTGGATTAAAGGTTTAATGCCAACCTTGATTATTCCTTTTGTAGCC
    TCTTTGGTAAGTAGTTTGATTATGATTTATATTATTGGAGCGCCTATCGCAGCCTTTACC
    AACTGGTTGACGAACTTATTACAAAGCTTGGGAAGTGCTTCAAATGGTTTGATGGGGGCA
    GTTATTGGAGTTCTCAGTGCTGTTGACTTTGGTGGCCCACTTAATAAAACAGTCTATGCG
    TTTGTGTTGACTTTACAGGCTGAAGGTGTGAAAGAACCATTGACTGCTTTGCAATTGGTG
    AATACTGCTACACCAGTTGGATTTGGATTGGCCTATTTTATCGCGAAATTACTCAAAAAA
    AATATCTATACTCAAGAGGAAATCGAAACATTGAAATCGGCTGTTCCTATGGGGATTGTC
    AATATTGTTGAAGGTGTAATTCCGATTGTTATGAATAACTTGGTTCCAGGTCTCATTGCA
    ACAGGTATCGGTGGTGCTGTTGGTGGTGCTGTTTCTTTGACAATGGGTGCTGATTCTGCC
    GTGCCATTTGGTGGAGTGCTTATGTTACCAACCATGACTCGTCCAGTAGCTGGTATTTGT
    GCTTTGTTAGCCAACATTGTAGTCACAGGACTTGTCTACGCGATTTTGAAAAAACCAATA
    AAACATACAGAACCAGTTATGACTGTTGAAGAAGAGATTGATTTGTCAGATATTGAAATT
    TTGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1086

This data comes from external databases and cannot be edited.

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SP670_1702 [new locus tag: SP670_RS08430 ]
  • symbol: SP670_1702
  • description: PTS system, IIC component
  • length: 361
  • theoretical pI: 8.61982
  • theoretical MW: 36995.2
  • GRAVY: 0.960942

Function[edit | edit source]

  • TIGRFAM:
    PTS system, Fru family, IIC component (TIGR01427; HMM-score: 214.1)
    and 1 more
    PTS system, sucrose-specific IIBC component (TIGR01996; EC 2.7.1.69; HMM-score: 18.2)
  • TheSEED  :
    • PTS system, fructose-specific IIC component
    Carbohydrates Monosaccharides Fructose utilization  PTS system, fructose-specific IIC component
  • PFAM:
    PTS_EIIC (CL0493) PTS_EIIC; Phosphotransferase system, EIIC (PF02378; HMM-score: 29.3)
    and 1 more
    Viral_Gag (CL0148) Gag_spuma; Spumavirus gag protein (PF03276; HMM-score: 6.6)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 8
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.093174
    • TAT(Tat/SPI): 0.00676
    • LIPO(Sec/SPII): 0.069402
  • predicted transmembrane helices (TMHMM): 8

Accession numbers[edit | edit source]

  • GI:
  • RefSeq: ADM91758 NCBI
  • UniProt:

Protein sequence[edit | edit source]

  • MLKHLNLKGHLLTAISYMIPIVCGAGFLVAIGLAMGGGVPDALVAGKFTIWDALATMGGKALGLLPVVIATGLSYSIAGKPGIAPGFVVGLIANSVGSGFIGGILGGYIAGFLVQAIVKKVKVPNWIKGLMPTLIIPFVASLVSSLIMIYIIGAPIAAFTNWLTNLLQSLGSASNGLMGAVIGVLSAVDFGGPLNKTVYAFVLTLQAEGVKEPLTALQLVNTATPVGFGLAYFIAKLLKKNIYTQEEIETLKSAVPMGIVNIVEGVIPIVMNNLVPGLIATGIGGAVGGAVSLTMGADSAVPFGGVLMLPTMTRPVAGICALLANIVVTGLVYAILKKPIKHTEPVMTVEEEIDLSDIEIL

Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

Biological Material[edit | edit source]

Other Information[edit | edit source]

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]