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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 25-OCT-2019
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae ATCC 49619
- locus tag: SPAT_1254 [new locus tag: EL263_RS06600 ]
- pan locus tag?: PNEUPAN002700000
- symbol: SPAT_1254
- pan gene symbol?: ABC-N/P_2
- synonym:
- product: putative ABC transporter ATP-binding protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPAT_1254 [new locus tag: EL263_RS06600 ]
- symbol: SPAT_1254
- product: putative ABC transporter ATP-binding protein
- replicon: chromosome
- strand: -
- coordinates: 1250118..1251842
- length: 1725
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: AP018938 (1250118..1251842) NCBI
- BioCyc: see EL263_RS06600
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_1192 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1681ATGAAACACCTATTATCTTACTTCAAACCCTACATCAAGGAATCAATTTTAGCCCCCTTG
TTCAAGCTGTTAGAAGCTGTTTTTGAGCTCTTGGTTCCCATGGTGATTGCTGGGATTGTT
GACCAATCTTTACCTCAGGGAGATCAAGGTCATCTCTGGATGCAGATTGGCCTGCTCCTT
ATCTTTGCAGTAATTGGCGTTTTAGTGGCCTTGATAGCTCAATTTTACTCAGCAAAGGCA
GCAGTAGGTTTTGCTAAGGAATTGACAAACGATCTTTATCGTCATATTCTTTCCTTGCCC
AAGGACAGCAGAGACCGTCTGACAACTTCTAGTTTGGTCACTCGCTTGACTTCGGATACC
TACCAGATTCAGACTGGTATCAATCAATTCCTGCGTCTCTTTTTGCGAGCGCCCATTATC
GTTTTTGGTGCCATTTTTATGGCTTATCGAATCTCAGCTGAGTTGACTTTCTGGTTCTTA
GTCATGGTTGCCATTTTGACCATTGTAATTGTAGGGTTATCTCGATTGGTCAATCCTCTC
TACAGTAGTCTCAGAAAGAAAACGGACCAACTGGTTCAGGAAACGCGCCAGCAATTGCAA
GGGATGCGGGTTATTCGTGCTTTTGGTCAAGAAAAACGAGAGTTACAGATTTTTCAAACC
CTTAACCAAGTTTATGCTAGATTACAAGAAAAGACAGGTTTCTGGTCTAGTTTATTAACA
CCTCTGACCTATCTGATTGTCAATGGAACTCTTCTCGTTATTATCTGGCAAGGCTATATT
TCAATTCAAGGAGGAGTGCTCAGTCAAGGTGCTCTCATTGCTCTTATCAATTACCTCTTA
CAGATTTTGGTGGAATTGGTCAAGCTAGCCATGTTGATCAATTCCCTCAACCAGTCCTAT
ATCTCAGCCAAGCGAATCGAGGAAGTCTTTGTTGAGGCTCCAGAGGATATCCATTCAGAG
TTAGAACAAAAGCAAGCTACCAGAGATAAGGTTTTACAAGTCCAAGAATTGACCTTTACC
TATCCTGATGCAGCCCAGCCTTCTCTGAGAGACATTTCCTTTGATATGACTCAAGGACAA
ATTCTAGGTATCATCGGGGGAACTGGTTCTGGTAAATCAAGCTTGATTCAACTCATACTT
GGACTTTATCCAGTAAACAAGGGAAGAATTGACCTTTATCTAGATGGATTGAGTCCTCTT
AATTTGGAGCAATGGAGATCTTGGATTGCCTATGTGCCACAAAAGGTCGAACTCTTTAAG
GGAACTATTCGTTCCAACTTGACTTTAGGTTTAAATCAAGAAGTGACTGATCAAGAACTC
TGGCAAGCCTTGGAAATTGCTCAAGCTAAGGATTTTGTCAGTGATAAGGAAGGACTCTTG
GATGCTCTAGTTGAAGCAGGAGGGCGAAATTTCTCAGGTGGACAAAAACAAAGGCTGTCT
ATCGCACGAGCAGTCTTGCGCCAGGCTCCGTTTCTCATCCTAGATGATGCGACCTCAGCA
CTGGACACCATTACAGAGTCCAAGCTCTTGAAAGCTATTAGAGAAAATTTTCCAAACATG
AGCTTAATTTTGATCTCTCAACGAACCTCGACTTTACAGATGGCGGACCAGATTCTCCTC
TTGGAAAAAGGTGAGTTGCTAGCTGTTGGCAAGCACGATGACTTGATGAAATCCAGTCAA
GTCTATCGTGAAATCAATGCATCCCAACATGGAAAGGAGGACTAG60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPAT_1254 [new locus tag: EL263_RS06600 ]
- symbol: SPAT_1254
- description: putative ABC transporter ATP-binding protein
- length: 574
- theoretical pI: 7.83866
- theoretical MW: 64397.7
- GRAVY: 0.18554
⊟Function[edit | edit source]
- ⊞TIGRFAM: Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides lipid A export permease/ATP-binding protein MsbA (TIGR02203; HMM-score: 326.1)Transport and binding proteins Other lipid A export permease/ATP-binding protein MsbA (TIGR02203; HMM-score: 326.1)ABC transporter, permease/ATP-binding protein (TIGR02204; HMM-score: 289.8)Transport and binding proteins Other antigen peptide transporter 2 (TIGR00958; HMM-score: 277.6)and 70 more
- TheSEED: data available for D39, Hungary19A-6, TIGR4
- ⊞PFAM: ABC_membrane (CL0241) ABC_membrane; ABC transporter transmembrane region (PF00664; HMM-score: 141)and 11 more
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: BBG39303 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MKHLLSYFKPYIKESILAPLFKLLEAVFELLVPMVIAGIVDQSLPQGDQGHLWMQIGLLLIFAVIGVLVALIAQFYSAKAAVGFAKELTNDLYRHILSLPKDSRDRLTTSSLVTRLTSDTYQIQTGINQFLRLFLRAPIIVFGAIFMAYRISAELTFWFLVMVAILTIVIVGLSRLVNPLYSSLRKKTDQLVQETRQQLQGMRVIRAFGQEKRELQIFQTLNQVYARLQEKTGFWSSLLTPLTYLIVNGTLLVIIWQGYISIQGGVLSQGALIALINYLLQILVELVKLAMLINSLNQSYISAKRIEEVFVEAPEDIHSELEQKQATRDKVLQVQELTFTYPDAAQPSLRDISFDMTQGQILGIIGGTGSGKSSLIQLILGLYPVNKGRIDLYLDGLSPLNLEQWRSWIAYVPQKVELFKGTIRSNLTLGLNQEVTDQELWQALEIAQAKDFVSDKEGLLDALVEAGGRNFSGGQKQRLSIARAVLRQAPFLILDDATSALDTITESKLLKAIRENFPNMSLILISQRTSTLQMADQILLLEKGELLAVGKHDDLMKSSQVYREINASQHGKED
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1192 PneumoExpress