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From PneumoWiki
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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 31-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae A026
  • locus tag: T308_09535 [new locus tag: T308_RS09725 ]
  • pan locus tag?: PNEUPAN003646000
  • symbol: T308_09535
  • pan gene symbol?: gap
  • synonym:
  • product: glyceraldehyde-3-phosphate dehydrogenase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: T308_09535 [new locus tag: T308_RS09725 ]
  • symbol: T308_09535
  • product: glyceraldehyde-3-phosphate dehydrogenase
  • replicon: chromosome
  • strand: -
  • coordinates: 1832373..1833380
  • length: 1008
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATGGTAGTTAAAGTTGGTATTAACGGTTTCGGACGTATCGGTCGTCTTGCTTTCCGTCGT
    ATCCAAAACGTAGAAGGTGTTGAAGTTACACGCATCAACGACCTTACAGATCCAGTTATG
    CTTGCACACTTGTTGAAATACGACACAACTCAAGGTCGTTTCGACGGTACTGTTGAAGTT
    AAAGAAGGTGGATTCGAAGTTAACGGTAAATTCGTTAAAGTTTCTGCTGAACGTGATCCA
    GAGCAAATCGACTGGGCTACTGACGGTGTAGAAATCGTTCTTGAAGCTACTGGTTTCTTT
    GCTAAGAAAGAAGCAGCTGAAAAACACCTTAAAGGTGGAGCTAAAAAAGTTGTTATCACT
    GCTCCTGGTGGAAACGACGTTAAAACAGTTGTATTCAACACTAACCACGACGTTCTTGAC
    GGTACTGAAACAGTTATCTCAGGTGCTTCATGTACTACAAACTGCTTGGCTCCAATGGCT
    AAAGCTCTTCAAGATAACTTTGGTGTTGTTGAAGGATTGATGACTACTATCCACGCTTAC
    ACTGGTGACCAAATGATCCTTGACGGACCACACCGTGGTGGTGACCTTCGCCGTGCTCGC
    GCTGGTGCTGCAAACATCGTTCCTAACTCAACTGGTGCTGCTAAAGCTATCGGTCTTGTA
    ATCCCAGAATTGAACGGTAAACTTGACGGATCTGCACAACGCGTTCCAACTCCAACTGGA
    TCAGTTACTGAATTGGTAGCAGTTCTTGAAAAGAACGTTACTGTTGATGAAGTGAACGCA
    GCTATGAAAGCAGCTTCAAACGAATCATACGGTTACACAGAAGATCCAATCGTATCTTCA
    GATATCGTAGGTATGTCTTACGGTTCATTGTTTGACGCAACTCAAACTAAAGTTCTTGAC
    GTTGACGGTAAACAATTGGTTAAAGTTGTATCATGGTACGACAACGAAATGTCATACACT
    GCACAACTTGTTCGTACTCTTGAATACTTCGCAAAAATTGCTAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1008

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: T308_09535 [new locus tag: T308_RS09725 ]
  • symbol: T308_09535
  • description: glyceraldehyde-3-phosphate dehydrogenase
  • length: 335
  • theoretical pI: 5.10723
  • theoretical MW: 35841.5
  • GRAVY: -0.10209

⊟Function[edit | edit source]

  • ⊞⊞reaction:
    EC 1.2.1.12?  ExPASy
    Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) D-glyceraldehyde 3-phosphate + phosphate + NAD+ = 3-phospho-D-glyceroyl phosphate + NADH
  • ⊞⊞TIGRFAM:
    Metabolism Energy metabolism Glycolysis/gluconeogenesis glyceraldehyde-3-phosphate dehydrogenase, type I (TIGR01534; EC 1.2.1.-; HMM-score: 436)
    and 1 more
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Pyridoxine erythrose-4-phosphate dehydrogenase (TIGR01532; EC 1.2.1.72; HMM-score: 258.1)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • ⊞⊞PFAM:
    GADPH_aa-bio_dh (CL0139) Gp_dh_C; Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain (PF02800; HMM-score: 207.4)
    and 2 more
    NADP_Rossmann (CL0063) Gp_dh_N; Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain (PF00044; HMM-score: 120.1)
    DapB_N; Dihydrodipicolinate reductase, N-terminus (PF01113; HMM-score: 12.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • ⊞⊞DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.867
    • Cytoplasmic Membrane Score: 0.0003
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.1328
  • ⊞⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.003768
    • TAT(Tat/SPI): 0.000151
    • LIPO(Sec/SPII): 0.00049
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: AGZ48514 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MVVKVGINGFGRIGRLAFRRIQNVEGVEVTRINDLTDPVMLAHLLKYDTTQGRFDGTVEVKEGGFEVNGKFVKVSAERDPEQIDWATDGVEIVLEATGFFAKKEAAEKHLKGGAKKVVITAPGGNDVKTVVFNTNHDVLDGTETVISGASCTTNCLAPMAKALQDNFGVVEGLMTTIHAYTGDQMILDGPHRGGDLRRARAGAANIVPNSTGAAKAIGLVIPELNGKLDGSAQRVPTPTGSVTELVAVLEKNVTVDEVNAAMKAASNESYGYTEDPIVSSDIVGMSYGSLFDATQTKVLDVDGKQLVKVVSWYDNEMSYTAQLVRTLEYFAKIAK

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • data available for D39V

⊟Expression data[edit | edit source]

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=T308_09535&oldid=35581"
Insert paragraph

NCBI: 31-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae A026
  • locus tag: T308_09535 [new locus tag: T308_RS09725 ]
  • pan locus tag?: PNEUPAN003646000
  • symbol: T308_09535
  • pan gene symbol?: gap
  • synonym:
  • product: glyceraldehyde-3-phosphate dehydrogenase

Insert paragraph

⊟Genome View[edit | edit source]

Insert paragraph

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: T308_09535 [new locus tag: T308_RS09725 ]
  • symbol: T308_09535
  • product: glyceraldehyde-3-phosphate dehydrogenase
  • replicon: chromosome
  • strand: -
  • coordinates: 1832373..1833380
  • length: 1008
  • essential: unknown other strains

Insert paragraph

⊟Accession numbers[edit | edit source]

Insert paragraph

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATGGTAGTTAAAGTTGGTATTAACGGTTTCGGACGTATCGGTCGTCTTGCTTTCCGTCGT
    ATCCAAAACGTAGAAGGTGTTGAAGTTACACGCATCAACGACCTTACAGATCCAGTTATG
    CTTGCACACTTGTTGAAATACGACACAACTCAAGGTCGTTTCGACGGTACTGTTGAAGTT
    AAAGAAGGTGGATTCGAAGTTAACGGTAAATTCGTTAAAGTTTCTGCTGAACGTGATCCA
    GAGCAAATCGACTGGGCTACTGACGGTGTAGAAATCGTTCTTGAAGCTACTGGTTTCTTT
    GCTAAGAAAGAAGCAGCTGAAAAACACCTTAAAGGTGGAGCTAAAAAAGTTGTTATCACT
    GCTCCTGGTGGAAACGACGTTAAAACAGTTGTATTCAACACTAACCACGACGTTCTTGAC
    GGTACTGAAACAGTTATCTCAGGTGCTTCATGTACTACAAACTGCTTGGCTCCAATGGCT
    AAAGCTCTTCAAGATAACTTTGGTGTTGTTGAAGGATTGATGACTACTATCCACGCTTAC
    ACTGGTGACCAAATGATCCTTGACGGACCACACCGTGGTGGTGACCTTCGCCGTGCTCGC
    GCTGGTGCTGCAAACATCGTTCCTAACTCAACTGGTGCTGCTAAAGCTATCGGTCTTGTA
    ATCCCAGAATTGAACGGTAAACTTGACGGATCTGCACAACGCGTTCCAACTCCAACTGGA
    TCAGTTACTGAATTGGTAGCAGTTCTTGAAAAGAACGTTACTGTTGATGAAGTGAACGCA
    GCTATGAAAGCAGCTTCAAACGAATCATACGGTTACACAGAAGATCCAATCGTATCTTCA
    GATATCGTAGGTATGTCTTACGGTTCATTGTTTGACGCAACTCAAACTAAAGTTCTTGAC
    GTTGACGGTAAACAATTGGTTAAAGTTGTATCATGGTACGACAACGAAATGTCATACACT
    GCACAACTTGTTCGTACTCTTGAATACTTCGCAAAAATTGCTAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1008

Insert paragraph

This data comes from external databases and cannot be edited.

Insert paragraph

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: T308_09535 [new locus tag: T308_RS09725 ]
  • symbol: T308_09535
  • description: glyceraldehyde-3-phosphate dehydrogenase
  • length: 335
  • theoretical pI: 5.10723
  • theoretical MW: 35841.5
  • GRAVY: -0.10209

Insert paragraph

⊟Function[edit | edit source]

  • ⊞reaction:
    EC 1.2.1.12?  ExPASy
    Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) D-glyceraldehyde 3-phosphate + phosphate + NAD+ = 3-phospho-D-glyceroyl phosphate + NADH
  • ⊞TIGRFAM:
    Metabolism Energy metabolism Glycolysis/gluconeogenesis glyceraldehyde-3-phosphate dehydrogenase, type I (TIGR01534; EC 1.2.1.-; HMM-score: 436)
    and 1 more
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Pyridoxine erythrose-4-phosphate dehydrogenase (TIGR01532; EC 1.2.1.72; HMM-score: 258.1)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • ⊞PFAM:
    GADPH_aa-bio_dh (CL0139) Gp_dh_C; Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain (PF02800; HMM-score: 207.4)
    and 2 more
    NADP_Rossmann (CL0063) Gp_dh_N; Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain (PF00044; HMM-score: 120.1)
    DapB_N; Dihydrodipicolinate reductase, N-terminus (PF01113; HMM-score: 12.5)

Insert paragraph

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Insert paragraph

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • ⊞DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.867
    • Cytoplasmic Membrane Score: 0.0003
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.1328
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.003768
    • TAT(Tat/SPI): 0.000151
    • LIPO(Sec/SPII): 0.00049
  • predicted transmembrane helices (TMHMM): 0

Insert paragraph

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: AGZ48514 NCBI
  • UniProt:

Insert paragraph

⊟Protein sequence[edit | edit source]

  • MVVKVGINGFGRIGRLAFRRIQNVEGVEVTRINDLTDPVMLAHLLKYDTTQGRFDGTVEVKEGGFEVNGKFVKVSAERDPEQIDWATDGVEIVLEATGFFAKKEAAEKHLKGGAKKVVITAPGGNDVKTVVFNTNHDVLDGTETVISGASCTTNCLAPMAKALQDNFGVVEGLMTTIHAYTGDQMILDGPHRGGDLRRARAGAANIVPNSTGAAKAIGLVIPELNGKLDGSAQRVPTPTGSVTELVAVLEKNVTVDEVNAAMKAASNESYGYTEDPIVSSDIVGMSYGSLFDATQTKVLDVDGKQLVKVVSWYDNEMSYTAQLVRTLEYFAKIAK

Insert paragraph

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

Insert paragraph

⊟Expression & Regulation[edit | edit source]

Insert paragraph

⊟Operon[edit | edit source]

Insert paragraph

⊟Regulation[edit | edit source]

  • data available for D39V

Insert paragraph

⊟Expression data[edit | edit source]

Insert paragraph

⊞Biological Material[edit | edit source]

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

⊞Other Information[edit | edit source]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

Insert paragraph

⊟Relevant publications[edit | edit source]

Insert paragraph