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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 19-NOV-2015
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae A66
- locus tag: A66_00512 [new locus tag: A66_RS02565 ]
- pan locus tag?: PNEUPAN001448000
- symbol: A66_00512
- pan gene symbol?: rbfA2
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: A66_00512 [new locus tag: A66_RS02565 ]
- symbol: A66_00512
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 480962..481489
- length: 528
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: LN847353 (480962..481489) NCBI
- BioCyc:
- MicrobesOnline:
- PneumoBrowse for strain D39V:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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121
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241
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361
421
481ATGCATCTTTTCATCATTGGTGCTCCAGCATCAGGAAAAATGACCATTGGTCAAGAATTA
TCTCGACTGACGGATGCTACCCTATTTTATAACCATCAAGCCATTGATTTTGCACTAGAA
ATCTATCAGGACTATACAGAGGAAATGTGGGAATTTGTTTGTGGAATCACTTTTGTAATT
GATTTTTCAAATCAGTATCAGCTGATGTATTTAAAGCAAATTCAGAATTTGTTGGATGAT
TATCATCAAGAGATTCTTTTTGTTGAGTTGGAAACAAGTCTTGAAGAGTGCATACGTCGA
AATCGAACGGAGAATCGATTAAAGCACAAACCCTTAAAACGACATATTGAGGTATCTGAA
AGAGAAATTTTAGAGACCGCTGAAACACTTCAATTAAATTCCCAATATCAACCGAATGAG
TTGCACCACTACTTTAAAATAAATAATACGAATTTGTCTGCAGAAGAAGCTGCTAAGCAA
ATTCAAAATAAAATAAACAAAATAGAGAAAGGACACACACATGTCTAA60
120
180
240
300
360
420
480
528
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: A66_00512 [new locus tag: A66_RS02565 ]
- symbol: A66_00512
- description: hypothetical protein
- length: 175
- theoretical pI: 5.52761
- theoretical MW: 20729.3
- GRAVY: -0.530286
⊟Function[edit | edit source]
- TIGRFAM: Purines, pyrimidines, nucleosides, and nucleotides Nucleotide and nucleoside interconversions adenylate kinase (TIGR01351; EC 2.7.4.-; HMM-score: 11.1)
- TheSEED: data available for Hungary19A-6, TIGR4
- PFAM: P-loop_NTPase (CL0023) AAA_18; AAA domain (PF13238; HMM-score: 29.3)and 3 moreAAA_33; AAA domain (PF13671; HMM-score: 18.1)no clan defined 7TMR-HDED; 7TM-HD extracellular (PF07697; HMM-score: 14.3)Glyco_hydro_tim (CL0058) Alpha_L_fucos; Alpha-L-fucosidase (PF01120; HMM-score: 14)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.9778
- Cytoplasmic Membrane Score: 0.0056
- Cell wall & surface Score: 0.0002
- Extracellular Score: 0.0164
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.012235
- TAT(Tat/SPI): 0.000371
- LIPO(Sec/SPII): 0.002415
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: CRI61223 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MHLFIIGAPASGKMTIGQELSRLTDATLFYNHQAIDFALEIYQDYTEEMWEFVCGITFVIDFSNQYQLMYLKQIQNLLDDYHQEILFVELETSLEECIRRNRTENRLKHKPLKRHIEVSEREILETAETLQLNSQYQPNELHHYFKINNTNLSAEEAAKQIQNKINKIEKGHTHV
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- data available for TIGR4
⊟Transcription[edit | edit source]
- transcription start site:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V:
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]