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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 13-DEC-2020
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae A66
- locus tag: A66_RS05380 [old locus tag: A66_01074 ]
- pan locus tag?: PNEUPAN002453000
- symbol: A66_RS05380
- pan gene symbol?: lacT
- synonym:
- product: transcription antiterminator
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: A66_RS05380 [old locus tag: A66_01074 ]
- symbol: A66_RS05380
- product: transcription antiterminator
- replicon: chromosome
- strand: -
- coordinates: 1042098..1042934
- length: 837
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NZ_LN847353 (1042098..1042934) NCBI
- BioCyc:
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_1049 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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781ATGTATCGAATTCTAAATCCAATGAATCACAATGTCTCGCTTGTCAGAAATGATAAGGGA
GAAGAGGTGATTGTAATTGGTAAGGGGATTGCATTCGGAAAAAGGAAGGGGGATTTGATT
GCTGAAAATCAGGTTGAGAAAATCTTTCGGATGAAGACCGAAGAGTCCAGAGAAAACTTT
ATGGCTCTTCTCAAAGATGTTCCGCTTGATTTTATCACAGTGACCTATGAAATCATTGAT
AAGCTATCAAAGAAATATCATTATCCGATTCAAGAGTATCTCTATGTAACCTTGACAGAT
CATATTTACTGTTCTTATCAAGCTCTAACTCAAGGAAGGTACAAGGATAGTAATCTGCCA
GATATTTCCGCTAAGTATCCTGTCGCTTTTCAAATCGCAAATGAAGCTTTTGAAATTTAC
CGTCAGAAGCTAGCAGATCATTTTCCTGAGGACGAAATTATTCGGATTGCTTATCATTTC
ATTAATGCTGAAGGTGAAAATGAAGTGGAACTTGTGGAGTCGATTGATAAGAGGAAAGAA
ATTCTCAGGAATGTTGAAGAAGTTTTAACGGACTATGCAATTCAACGAACTAAAAAGAAT
AACCATTTCTATGATCGCTTTATGATCCATTTGAATTATTTCTTGGATTATTTAGACAGA
TCTAGAGATGATAACCAATCACTTCTGGATATGGAAGATCATATTAAACAATCCTATCCA
AAAGCCTTCGAGATTGGTTCCAAGATCTATGATGTGATTACGCAACATACGGGTCTTGAT
TTGTATAAAAGTGAACGAGTTTATCTAGTTCTACATATCCAACGTTTATTGTCATAA60
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837
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: A66_RS05380 [old locus tag: A66_01074 ]
- symbol: A66_RS05380
- description: transcription antiterminator
- length: 278
- theoretical pI: 6.01088
- theoretical MW: 32980.3
- GRAVY: -0.482734
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: data available for D39, Hungary19A-6, TIGR4
- PFAM: PRD (CL0166) PRD; PRD domain (PF00874; HMM-score: 111)and 1 moreno clan defined CAT_RBD; CAT RNA binding domain (PF03123; HMM-score: 69.5)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.003529
- TAT(Tat/SPI): 0.000201
- LIPO(Sec/SPII): 0.000391
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_053039620 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MYRILNPMNHNVSLVRNDKGEEVIVIGKGIAFGKRKGDLIAENQVEKIFRMKTEESRENFMALLKDVPLDFITVTYEIIDKLSKKYHYPIQEYLYVTLTDHIYCSYQALTQGRYKDSNLPDISAKYPVAFQIANEAFEIYRQKLADHFPEDEIIRIAYHFINAEGENEVELVESIDKRKEILRNVEEVLTDYAIQRTKKNNHFYDRFMIHLNYFLDYLDRSRDDNQSLLDMEDHIKQSYPKAFEIGSKIYDVITQHTGLDLYKSERVYLVLHIQRLLS
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- data available for TIGR4
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1049 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.