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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 17-DEC-2024
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae A66
- locus tag: A66_RS06140 [old locus tag: A66_01232 ]
- pan locus tag?: PNEUPAN002667000
- symbol: A66_RS06140
- pan gene symbol?: —
- synonym:
- product: YhfC family intramembrane metalloprotease
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: A66_RS06140 [old locus tag: A66_01232 ]
- symbol: A66_RS06140
- product: YhfC family intramembrane metalloprotease
- replicon: chromosome
- strand: -
- coordinates: 1203614..1204366
- length: 753
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NZ_LN847353 (1203614..1204366) NCBI
- BioCyc:
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_1223 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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721ATGACCATTCATATCATTATTACCATGTTGCTGTTGCTAGCTTTTCTGATAGGAAGCATT
TGGTTTGCCAAAAAGAAATACCAGATTAATCTAGCTGTCTTGGGCTTGGGTGCAGTCGCT
TTCTTTGTCTCTTCGCAGATTTTGGAAAAACTGGTGCATATCTTGATTTTGCATCCTCAA
AAAGACGGTAGTATTGCCCTCTTGCAAGATCATCCGCTTATCTATATTATCTATGGCCTA
GCCATGGCAGCATTTTTTGAGGAAACGGCTCGTCTTGTTTTCTTCAAATGGTTGGAGAAA
AAGAGAAGTTTGGAAAAGGCAGATGCCTTGGCCTATGGCCTAGGGCATGGTGGCTTGGAG
TTGATTTTTCTAGGCCTTATTAGTTTACTCAATCTTTACATCGTTCTTTCGGCAGTTCAA
ACTCAGAATCCACAGGTTATGCAATTACTGTCTGAAAATATGTTAAAAACCATTCAGTCA
CTTTCGGTCTGGCAGATTTATTTGCTTGGTTTTGAGCGAATCTTGGCGCTTGGTTTCCAA
TTACTTTTGACAGTTTGGGTTTACCAAGCTGTTCGCCAGAAGAAATGGATTTATCTCCTA
GCAGCCTATGGCTTGCATGCCTTCTTTGATCTGGCACCATCTTTTTTCCAAGTAGGCTGG
TTGACAAATCCAGTCTTGGTTGAAGTGATTCTAGCACTGGAGCTCGTTCTGGTTGCCTAT
GGAACCAAGGAAATCTTTTGTAAAAAATCATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: A66_RS06140 [old locus tag: A66_01232 ]
- symbol: A66_RS06140
- description: YhfC family intramembrane metalloprotease
- length: 250
- theoretical pI: 9.40306
- theoretical MW: 28299.8
- GRAVY: 0.8128
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED:
- PFAM: Peptidase_U (CL0472) YhfC; YhfC intramembrane metalloprotease (PF10086; HMM-score: 251.5)and 2 moreno clan defined YrhK; YrhK-like protein (PF14145; HMM-score: 10.9)GAPT; GRB2-binding adapter (GAPT) (PF11770; HMM-score: 7.5)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 7
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0.0003
- Cytoplasmic Membrane Score: 0.9985
- Cell wall & surface Score: 0
- Extracellular Score: 0.0012
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.00676
- TAT(Tat/SPI): 0.000419
- LIPO(Sec/SPII): 0.017215
- predicted transmembrane helices (TMHMM): 7
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_000152215 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MTIHIIITMLLLLAFLIGSIWFAKKKYQINLAVLGLGAVAFFVSSQILEKLVHILILHPQKDGSIALLQDHPLIYIIYGLAMAAFFEETARLVFFKWLEKKRSLEKADALAYGLGHGGLELIFLGLISLLNLYIVLSAVQTQNPQVMQLLSENMLKTIQSLSVWQIYLLGFERILALGFQLLLTVWVYQAVRQKKWIYLLAAYGLHAFFDLAPSFFQVGWLTNPVLVEVILALELVLVAYGTKEIFCKKS
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1223 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]