Jump to navigation
Jump to search
PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 13-DEC-2020
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae A66
- locus tag: A66_RS08225 [old locus tag: A66_01653 ]
- pan locus tag?: PNEUPAN003345000
- symbol: A66_RS08225
- pan gene symbol?: paaI
- synonym:
- product: PaaI family thioesterase
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: A66_RS08225 [old locus tag: A66_01653 ]
- symbol: A66_RS08225
- product: PaaI family thioesterase
- replicon: chromosome
- strand: -
- coordinates: 1580713..1581117
- length: 405
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NZ_LN847353 (1580713..1581117) NCBI
- BioCyc:
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_1632 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361ATGAAAGACTTTCATTTTGACGCTATATCTGCCTTTGAAAATTACGAAATTGAAAAAATG
AGAGATGGTCACGTTGTGGTGACGACCAAAGTAGTGAACTCGTCGCTCAACTACTATGGC
AATGCCCATGGTGGCTATCTATTCACGCTATGTGACCAAATCAGTGGTTTGGTGGTTATC
TCGCTGGGACTTGATGGGGTGACACTCCAATCCTCTATCAACTACCTTAAGGCAGGAAAA
CTCGACGATGTATTGACCATTAAAGGAGAATGTGTCCATCAAGGTCGTACAACCTGTGTG
ATGGATGTGGATATCACCAATCAAGAGGGCAGAAATGTCTGTAAGGCAACCTTTACTATG
TTTGTCACAGGCCAGCGGTCAGAAGAAAGACAGGTAAGTATATAA60
120
180
240
300
360
405
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: A66_RS08225 [old locus tag: A66_01653 ]
- symbol: A66_RS08225
- description: PaaI family thioesterase
- length: 134
- theoretical pI: 5.57111
- theoretical MW: 14847.8
- GRAVY: -0.0738806
⊟Function[edit | edit source]
- TIGRFAM: phenylacetic acid degradation protein PaaD (TIGR02286; HMM-score: 66.9)uncharacterized domain 1 (TIGR00369; HMM-score: 66.2)and 2 moreUnknown function General acyl-CoA thioester hydrolase, YbgC/YbaW family (TIGR00051; HMM-score: 28.7)tol-pal system-associated acyl-CoA thioesterase (TIGR02799; EC 3.1.2.-; HMM-score: 19.3)
- TheSEED: data available for D39, Hungary19A-6, TIGR4
- PFAM: HotDog (CL0050) 4HBT; Thioesterase superfamily (PF03061; HMM-score: 70.1)and 3 moreDUF4442; Domain of unknown function (DUF4442) (PF14539; HMM-score: 27.7)4HBT_3; Thioesterase-like superfamily (PF13622; HMM-score: 26.1)Acyl-ACP_TE; Acyl-ACP thioesterase (PF01643; HMM-score: 17.3)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.076479
- TAT(Tat/SPI): 0.000431
- LIPO(Sec/SPII): 0.000542
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_000651212 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MKDFHFDAISAFENYEIEKMRDGHVVVTTKVVNSSLNYYGNAHGGYLFTLCDQISGLVVISLGLDGVTLQSSINYLKAGKLDDVLTIKGECVHQGRTTCVMDVDITNQEGRNVCKATFTMFVTGQRSEERQVSI
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1632 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.