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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 03-SEP-2019

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae ASP0581
  • locus tag: ASP0581_11110 [new locus tag: EL334_RS05945 ]
  • pan locus tag?: PNEUPAN000159000
  • symbol: ASP0581_11110
  • pan gene symbol?: bbmA_1
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: ASP0581_11110 [new locus tag: EL334_RS05945 ]
  • symbol: ASP0581_11110
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1112347..1113090
  • length: 744
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: AP019192 (1112347..1113090) NCBI
  • BioCyc: see EL334_RS05945
  • MicrobesOnline:
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    TTGGATGTGGCTAATGAGATTGACCATCAGTTTTGGAGGGATTTTCGCAAGACAGTTCTA
    GCTAAAAAGCCTGATCTTTATATTTTAGGAGAAGTCTGGCATACGTCTCAGCCTTGGCTA
    AATGGAGATGAGTTCCACGCGGTCATGAATTATCCTTTATCTGATAGCATCAAGGACTAT
    TTCTTACGAGGAGTTAAGAAGACAGACCAGTTCATCGATGAAATCAATGACCAATCTATG
    TATTACAAGCAGCAGATTTCAGAAGTTATGTTTAATCTCTTGGATTCGCATGATACAGAG
    CGAATCTTGTGGACGGCCAATGAGGATGTTCAACTGGTCAAATCAGCCTTAGCCTTTCTC
    TTTCTACAAAAAGGAACACCGTGTATCTATTACGGAACAGAGTTATCCTTAACTGGAGGT
    CCAGATCCAGATTGCCGTCGTTGTATGCCTTGGGAACGCGTCTCAAGTGATAATGATATG
    CTGAACTTTATGAAGAAGCTGATTGAGATTCGGAAACCCGCGTCAGCAATCATTCAGCAT
    GGCAAGTATAGTCTCCAAGAAATTAAACAAGATGTAGTAGCATTGGAATGGAAATGCGAT
    GGACAAATTCTTAAAGCTATCTTTAACCAGTCCAAAGAAGATTATCTTTTAGAGAAGGAA
    ACAGTAGCACTAGCAAGCAATTGCCAAGAATTAGAGAATCAGCTTGTCATCTCTCCAAAA
    GGATTTGTGATTTTCAAAAACTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    744

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: ASP0581_11110 [new locus tag: EL334_RS05945 ]
  • symbol: ASP0581_11110
  • description: hypothetical protein
  • length: 247
  • theoretical pI: 4.90768
  • theoretical MW: 28744.7
  • GRAVY: -0.390688

⊟Function[edit | edit source]

  • TIGRFAM:
    alpha,alpha-phosphotrehalase (TIGR02403; EC 3.2.1.93; HMM-score: 25)
    pullulanase, type I (TIGR02104; EC 3.2.1.41; HMM-score: 23.1)
    Metabolism Energy metabolism Biosynthesis and degradation of polysaccharides trehalose synthase (TIGR02456; EC 5.4.99.16; HMM-score: 20.5)
    and 1 more
    Metabolism Energy metabolism Biosynthesis and degradation of polysaccharides glycogen debranching enzyme GlgX (TIGR02100; EC 3.2.1.-; HMM-score: 16.7)
  • TheSEED: data available for Hungary19A-6
  • PFAM:
    Glyco_hydro_tim (CL0058) Alpha-amylase; Alpha amylase, catalytic domain (PF00128; HMM-score: 75)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.003759
    • TAT(Tat/SPI): 0.000189
    • LIPO(Sec/SPII): 0.000394
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: BBG81633 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MDVANEIDHQFWRDFRKTVLAKKPDLYILGEVWHTSQPWLNGDEFHAVMNYPLSDSIKDYFLRGVKKTDQFIDEINDQSMYYKQQISEVMFNLLDSHDTERILWTANEDVQLVKSALAFLFLQKGTPCIYYGTELSLTGGPDPDCRRCMPWERVSSDNDMLNFMKKLIEIRKPASAIIQHGKYSLQEIKQDVVALEWKCDGQILKAIFNQSKEDYLLEKETVALASNCQELENQLVISPKGFVIFKN

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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