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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 03-SEP-2019
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae ASP0581
- locus tag: ASP0581_16210 [new locus tag: EL334_RS08570 ]
- pan locus tag?: PNEUPAN003078000
- symbol: ABC-MSP_12
- pan gene symbol?: satC
- synonym:
- product: sugar ABC transporter permease
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: ASP0581_16210 [new locus tag: EL334_RS08570 ]
- symbol: ABC-MSP_12
- product: sugar ABC transporter permease
- replicon: chromosome
- strand: -
- coordinates: 1603695..1604534
- length: 840
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: AP019192 (1603695..1604534) NCBI
- BioCyc: see EL334_RS08570
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_1493 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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781ATGCAATCTACACAAAAGAAACCTTTAACAGCTTTCACTGTTATTTCAACTATTATCTTG
CTCTTGTTGACCGTGCTGTTCATCTTTCCGTTCTACTGGATTTTGACAGGTGCCTTCAAA
TCACAACCTGATACCATTATGATTCCGCCACAATGGTTCCCTAAAATGCCAACCATGGAA
AACTTCCAACAACTCATGGTGCAAAACCCTGCCTTGCAGTGGATGTGGAACTCTGTGTTT
ATCTCATTGGTGACCATGTTCTTAGTTTGTGCAACCTCTTCTCTAGCAGGTTATGTATTG
GCTAAAAAACGTTTCTATGGTCAACGTATTCTTTTTGCTATCTTTATTGCTGCCATGGCA
CTTCCGAAACAAGTTGTCCTTGTACCGTTGGTACGTATCGTCAACTTCATGGGAATCCAC
GATACTCTCTGGGCAGTTATCTTGCCTTTGATTGGATGGCCATTCGGTGTCTTCCTCATG
AAACAATTTAGTGAAAATATTCCTACAGAGTTGCTTGAATCAGCTAAAATCGACGGTTGT
GGTGAGATTCGTACCTTCTGGAGTGTAGCCTTCCCGATTGTGAAACCAGGGTTTGCAGCC
CTTGCAATCTTTACCTTCATCAATACTTGGAATGACTACTTCATGCAATTGGTAATGTTG
ACTTCACGTAACAATTTGACCATCTCACTTGGGGTTGCGACCATGCAGGCTGAAATGGCA
ACCAACTATGGTTTGATTATGGCAGGAGCTGCCCTTGCTGCTGTTCCAATCGTCACAGTC
TTCCTAGTCTTCCAAAAATCCTTCACACAGGGTATTACTATGGGAGCGGTCAAAGGATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: ASP0581_16210 [new locus tag: EL334_RS08570 ]
- symbol: ABC-MSP_12
- description: sugar ABC transporter permease
- length: 279
- theoretical pI: 10.0354
- theoretical MW: 31222.3
- GRAVY: 0.756989
⊟Function[edit | edit source]
- TIGRFAM: NifC-like ABC-type porter (TIGR01581; HMM-score: 32.5)Transport and binding proteins Anions molybdate ABC transporter, permease protein (TIGR02141; HMM-score: 31.6)and 4 moreTransport and binding proteins Amino acids, peptides and amines putative 2-aminoethylphosphonate ABC transporter, permease protein (TIGR03262; HMM-score: 25.5)Transport and binding proteins Anions sulfate ABC transporter, permease protein CysT (TIGR02139; HMM-score: 20.2)Transport and binding proteins Anions sulfate ABC transporter, permease protein (TIGR00969; HMM-score: 17)2-aminoethylphosphonate ABC transporter, permease protein (TIGR03226; HMM-score: 17)
- TheSEED: data available for D39, Hungary19A-6, TIGR4
- PFAM: BPD_transp_1 (CL0404) BPD_transp_1; Binding-protein-dependent transport system inner membrane component (PF00528; HMM-score: 75.1)and 1 moreno clan defined DUF4083; Domain of unknown function (DUF4083) (PF13314; HMM-score: 10.9)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 5
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.011333
- TAT(Tat/SPI): 0.000772
- LIPO(Sec/SPII): 0.002828
- predicted transmembrane helices (TMHMM): 6
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: BBG82143 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MQSTQKKPLTAFTVISTIILLLLTVLFIFPFYWILTGAFKSQPDTIMIPPQWFPKMPTMENFQQLMVQNPALQWMWNSVFISLVTMFLVCATSSLAGYVLAKKRFYGQRILFAIFIAAMALPKQVVLVPLVRIVNFMGIHDTLWAVILPLIGWPFGVFLMKQFSENIPTELLESAKIDGCGEIRTFWSVAFPIVKPGFAALAIFTFINTWNDYFMQLVMLTSRNNLTISLGVATMQAEMATNYGLIMAGAALAAVPIVTVFLVFQKSFTQGITMGAVKG
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- data available for TIGR4
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1493 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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