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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 13-OCT-2024
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae NCTC7465
- locus tag: AT689_RS04730 [old locus tag: ERS445053_00924 ]
- pan locus tag?: PNEUPAN003395000
- symbol: yidD
- pan gene symbol?: yidD
- synonym:
- product: membrane protein insertion efficiency factor YidD
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: AT689_RS04730 [old locus tag: ERS445053_00924 ]
- symbol: yidD
- product: membrane protein insertion efficiency factor YidD
- replicon: chromosome
- strand: +
- coordinates: 872400..872642
- length: 243
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NZ_LN831051 (872400..872642) NCBI
- BioCyc: AT689_RS04730 BioCyc
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_1653 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241ATGAAACGAATTTTAATAGCGCCTGTGCGCTTTTACCAACGTTTTATCTCACCAGTCTTT
CCACCCTCTTGTCGCTTTGAGCTGACTTGTTCCAACTACATGATTCAGGCTATTGAAAAA
CATGGTTTTAAGGGGGTATTGATGGGCTTGGCTCGGATTTTACGTTGTCATCCCTGGTCG
AAAACAGGTAAGGACCCCGTTCCAGACCACTTTTCCCTTAAACGAAATCAAGAAGGGGAA
TGA60
120
180
240
243
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: AT689_RS04730 [old locus tag: ERS445053_00924 ]
- symbol: YidD
- description: membrane protein insertion efficiency factor YidD
- length: 80
- theoretical pI: 10.3895
- theoretical MW: 9319.96
- GRAVY: -0.28875
⊟Function[edit | edit source]
- TIGRFAM: Hypothetical proteins Conserved putative membrane protein insertion efficiency factor (TIGR00278; HMM-score: 82.3)
- TheSEED: data available for D39, Hungary19A-6, TIGR4
- PFAM: no clan defined YidD; Putative membrane protein insertion efficiency factor (PF01809; HMM-score: 97.3)and 1 moreSPT_ssu-like; Small subunit of serine palmitoyltransferase-like (PF11779; HMM-score: 13.3)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.4756
- Cytoplasmic Membrane Score: 0.4731
- Cell wall & surface Score: 0.0003
- Extracellular Score: 0.051
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.01378
- TAT(Tat/SPI): 0.001263
- LIPO(Sec/SPII): 0.013007
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_000821640 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MKRILIAPVRFYQRFISPVFPPSCRFELTCSNYMIQAIEKHGFKGVLMGLARILRCHPWSKTGKDPVPDHFSLKRNQEGE
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1653 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]