From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 09-DEC-2016

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae SP49
  • locus tag: BMJ42_00363 [new locus tag: BMJ42_RS01915 ]
  • pan locus tag?: PNEUPAN000976000
  • symbol: BMJ42_00363
  • pan gene symbol?: —
  • synonym:
  • product: Two-component sensor kinase YesM

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: BMJ42_00363 [new locus tag: BMJ42_RS01915 ]
  • symbol: BMJ42_00363
  • product: Two-component sensor kinase YesM
  • replicon: chromosome
  • strand: -
  • coordinates: 299752..300135
  • length: 384
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: CP018136 (299752..300135) NCBI
  • BioCyc: see BMJ42_RS01915
  • MicrobesOnline:
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    ATGATTCATAAGATTCGTTTCGAGCACTTTTCCTATGATATTGTCTGCCCAGAAACTGTC
    GATAATCAGCCTATCCCTAAACTTTTCTTGCTTCCTCTAGTAGAAAATGCTATAAAACAT
    GGGATGCAATACCGTATTGATCTTCATATTGATATCCACATTACCTTGGAAGCAGATTCT
    CTAACTTTTTTAGTCAAGGATAATGCTGGAGGACTCACCAAACAAGAGCGATTCGCTATT
    TTAGACTCTTTAGAAAGCCCTCATACCCAGCATGGCATCATGAACAGCTACAAACAATTG
    AGCAATTTCTTTTCTGATGTCCAGCTAGATTTAGGAGTCAATCGCCAAGGAGAAACTTGG
    GTCAAATTTGTAACGAAAGACTAA
    60
    120
    180
    240
    300
    360
    384

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: BMJ42_00363 [new locus tag: BMJ42_RS01915 ]
  • symbol: BMJ42_00363
  • description: Two-component sensor kinase YesM
  • length: 127
  • theoretical pI: 6.13674
  • theoretical MW: 14665.7
  • GRAVY: -0.222047

⊟Function[edit | edit source]

  • TIGRFAM:
    Cellular processes Cellular processes Sporulation and germination anti-sigma F factor (TIGR01925; EC 2.7.11.1; HMM-score: 14.9)
    Signal transduction Regulatory functions Protein interactions anti-sigma F factor (TIGR01925; EC 2.7.11.1; HMM-score: 14.9)
    Signal transduction Signal transduction Two-component systems phosphate regulon sensor kinase PhoR (TIGR02966; EC 2.7.3.-; HMM-score: 12.4)
    and 1 more
    Signal transduction Signal transduction Two-component systems TMAO reductase sytem sensor TorS (TIGR02956; EC 2.7.13.3; HMM-score: 11.7)
  • TheSEED: data available for Hungary19A-6
  • PFAM:
    His_Kinase_A (CL0025) HATPase_c; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (PF02518; HMM-score: 18.7)
    and 3 more
    no clan defined DUF5793; Family of unknown function (DUF5793) (PF19106; HMM-score: 13.6)
    His_Kinase_A (CL0025) HATPase_c_3; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (PF13589; HMM-score: 13)
    HATPase_c_2; Histidine kinase-like ATPase domain (PF13581; HMM-score: 12.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9919
    • Cytoplasmic Membrane Score: 0.0049
    • Cell wall & surface Score: 0.0001
    • Extracellular Score: 0.0031
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.001644
    • TAT(Tat/SPI): 0.000096
    • LIPO(Sec/SPII): 0.000243
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: APJ29701 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MIHKIRFEHFSYDIVCPETVDNQPIPKLFLLPLVENAIKHGMQYRIDLHIDIHITLEADSLTFLVKDNAGGLTKQERFAILDSLESPHTQHGIMNSYKQLSNFFSDVQLDLGVNRQGETWVKFVTKD

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=BMJ42_00363&oldid=133407"