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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 09-DEC-2016

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae SP49
  • locus tag: BMJ42_01042 [new locus tag: BMJ42_RS05590 ]
  • pan locus tag?: PNEUPAN002025000
  • symbol: pepT
  • pan gene symbol?: pepT
  • synonym:
  • product: peptidase T

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: BMJ42_01042 [new locus tag: BMJ42_RS05590 ]
  • symbol: pepT
  • product: peptidase T
  • replicon: chromosome
  • strand: -
  • coordinates: 982250..983473
  • length: 1224
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    ATGACTTATCCAAATCTCTTGGACCGCTTCTTAACCTACGTTAAGGTCAACACGCGCTCT
    GATGAACACTCTACTACTACTCCAAGTACACAGAGTCAGGTTGACTTCGCAACAAATGTC
    CTAATTCCTGAAATGAAACGTGTTGGACTGCAAAATGTTTACTATCTACCGAATGGTTTT
    GCTATTGGAACCTTGCCAGCCAACGATCCGTCTTTAACACGTAAGATTGGTTTTATATCG
    CACATGGATACTGCTGATTTTAATGCTGAAGGAGTCAATCCACAGGTAATTGAAAACTAC
    GATGGTGGTGTGATTGAACTAGGGAATTCTGGTTTCAAACTCGATCCAGCTGACTTCAAG
    AGTCTTGAAAAATATCCAGGACAAACGCTCATCACAACAGATGGAACAAGCTTGCTAGGT
    GCTGATGACAAGTCAGGAATTGCTGAAATTATGACAGCCATTGAATATCTAACTGCTCAT
    CCTGAAATTAAGCACTGTGAGATTCGTGTTGGTTTTGGTCCAGATGAAGAAATCGGTGTT
    GGTGCCAATAAATTTGATGCAGAAGATTTTGATGTGGATTTTGCCTACACTGTTGATGGT
    GGTCCACTAGGTGAACTTCAGTACGAGACTTTCTCAGCCGCTGGTGCTGAATTGCATTTC
    CAAGGCCGTAATGTCCACCCTGGTACTGCCAAAGGGCAGATGGTCAATGCCCTTCAGCTA
    GCAATTGATTTTCATAATCAACTTCCAGAAAATGACCGACCTGAGTTAACTGAAGGTTAC
    CAAGGTTTTTACCATCTAATAGATGTGACAGGTAGTGTTGAGGAGGCGCGTGCAAGCTAC
    ATCATTCGTGATTTTGAAAAAGATGCCTTTGAAGCGCGTAAAGCATCCATGCAATCTATC
    GCTGATAAGATGAATGAAGAACTTGGGAGCAACCGTGTCACTCTCAACTTGACAGACCAG
    TACTACAATATGAAAGAAGTCATTGAAAAAGATATGACTCCAATTACCATTGCTAAAGCC
    GTTATGGAAGATCTAGGTATCACGCCTATTATCGAACCAATCCGGGGTGGAACAGACGGC
    TCTAAGATTTCCTTTATGGGAATCCCAACTCCGAATATCTTTGCAGGTGGCGAAAATATG
    CACGGACGTTTTGAATACGTTAGCCTTCAGACTATGGAACGTGCAGTTGATACCATCATT
    GGCATCGTAGCTTATAAAGGCTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1224

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: BMJ42_01042 [new locus tag: BMJ42_RS05590 ]
  • symbol: PepT
  • description: peptidase T
  • length: 407
  • theoretical pI: 4.32389
  • theoretical MW: 44755.9
  • GRAVY: -0.302703

⊟Function[edit | edit source]

  • reaction:
    EC 3.4.11.4?  ExPASy
    Tripeptide aminopeptidase Release of the N-terminal residue from a tripeptide
  • TIGRFAM:
    Genetic information processing Protein fate Degradation of proteins, peptides, and glycopeptides peptidase T (TIGR01882; EC 3.4.11.-; HMM-score: 649.5)
    and 4 more
    peptidase T-like protein (TIGR01883; HMM-score: 90.4)
    Genetic information processing Protein fate Degradation of proteins, peptides, and glycopeptides peptidase, ArgE/DapE family (TIGR01910; EC 3.4.-.-; HMM-score: 31.6)
    Metabolism Amino acid biosynthesis Aspartate family succinyl-diaminopimelate desuccinylase (TIGR01900; EC 3.5.1.18; HMM-score: 16.2)
    hydrolase, peptidase M42 family (TIGR03106; HMM-score: 12.4)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • PFAM:
    no clan defined M20_dimer; Peptidase dimerisation domain (PF07687; HMM-score: 47.3)
    Peptidase_MH (CL0035) Peptidase_M20; Peptidase family M20/M25/M40 (PF01546; HMM-score: 43.5)
    and 2 more
    Peptidase_M42; M42 glutamyl aminopeptidase (PF05343; HMM-score: 32.3)
    no clan defined COX16; Cytochrome c oxidase assembly protein COX16 (PF14138; HMM-score: 12.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9906
    • Cytoplasmic Membrane Score: 0.0011
    • Cell wall & surface Score: 0.0001
    • Extracellular Score: 0.0081
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.008729
    • TAT(Tat/SPI): 0.002029
    • LIPO(Sec/SPII): 0.001529
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: APJ30358 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MTYPNLLDRFLTYVKVNTRSDEHSTTTPSTQSQVDFATNVLIPEMKRVGLQNVYYLPNGFAIGTLPANDPSLTRKIGFISHMDTADFNAEGVNPQVIENYDGGVIELGNSGFKLDPADFKSLEKYPGQTLITTDGTSLLGADDKSGIAEIMTAIEYLTAHPEIKHCEIRVGFGPDEEIGVGANKFDAEDFDVDFAYTVDGGPLGELQYETFSAAGAELHFQGRNVHPGTAKGQMVNALQLAIDFHNQLPENDRPELTEGYQGFYHLIDVTGSVEEARASYIIRDFEKDAFEARKASMQSIADKMNEELGSNRVTLNLTDQYYNMKEVIEKDMTPITIAKAVMEDLGITPIIEPIRGGTDGSKISFMGIPTPNIFAGGENMHGRFEYVSLQTMERAVDTIIGIVAYKG

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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