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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 09-DEC-2016
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae SP49
- locus tag: BMJ42_01309 [new locus tag: BMJ42_RS06950 ]
- pan locus tag?: PNEUPAN002669000
- symbol: BMJ42_01309
- pan gene symbol?: —
- synonym:
- product: beta-galactosidase subunit beta
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: BMJ42_01309 [new locus tag: BMJ42_RS06950 ]
- symbol: BMJ42_01309
- product: beta-galactosidase subunit beta
- replicon: chromosome
- strand: -
- coordinates: 1251994..1252452
- length: 459
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: CP018136 (1251994..1252452) NCBI
- BioCyc: see BMJ42_RS06950
- MicrobesOnline:
- PneumoBrowse for strain D39V:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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361
421ATGATTATTTCTGAACAATCTGATTTTAAACGATATGCTTCTGTCAATAAATATTTTTCA
AAAGTCTGTGATTTTTTAGAAAATACAAATTTGACAGATTTAGTTGATGGAAAAATTGAT
ATTGACGGGGAAAATGTTTTTGCAAATTGTATGACTTATCTAGCTGATGGAGTTCCAGGA
GATATTTTTGAAACTCATAAGAAATATTTAGATATTCATATTGTTGTTGAAAATACTGAA
AAAATGGCAGTAACTTCCCCAGTTCGTGCCCAGTCACGTGTACCTTTTAGCGAAGAGAAG
GATATTGCTTTTTACGATAGCAAAGACTATCAAATTGTTGAATTGCTTCCAGGGAATATG
TTGGTGACTTTTGAAGAAGATCTTCACCAACCAAAGATTCATTGCAATGATGAAACTGTT
AAAAAACTTGTTATCAAAGTTTTAAACGAGGAAAAATAA60
120
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420
459
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: BMJ42_01309 [new locus tag: BMJ42_RS06950 ]
- symbol: BMJ42_01309
- description: beta-galactosidase subunit beta
- length: 152
- theoretical pI: 4.48918
- theoretical MW: 17457.7
- GRAVY: -0.339474
⊟Function[edit | edit source]
- TIGRFAM: Unknown function General YhcH/YjgK/YiaL family protein (TIGR00022; HMM-score: 140.7)
- TheSEED: data available for Hungary19A-6, TIGR4
- PFAM: Cupin (CL0029) DUF386; YhcH/YjgK/YiaL (PF04074; HMM-score: 129.8)and 1 moreGlobin (CL0090) HisK_N; Histidine kinase N terminal (PF09385; HMM-score: 12)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.009542
- TAT(Tat/SPI): 0.000278
- LIPO(Sec/SPII): 0.002032
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: APJ30610 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MIISEQSDFKRYASVNKYFSKVCDFLENTNLTDLVDGKIDIDGENVFANCMTYLADGVPGDIFETHKKYLDIHIVVENTEKMAVTSPVRAQSRVPFSEEKDIAFYDSKDYQIVELLPGNMLVTFEEDLHQPKIHCNDETVKKLVIKVLNEEK
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- data available for TIGR4
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V:
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.