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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 08-MAR-2025

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae SP49
  • locus tag: BMJ42_RS01545 [old locus tag: BMJ42_00288 ]
  • pan locus tag?: PNEUPAN000910000
  • symbol: BMJ42_RS01545
  • pan gene symbol?: —
  • synonym:
  • product: RNA-binding domain-containing protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: BMJ42_RS01545 [old locus tag: BMJ42_00288 ]
  • symbol: BMJ42_RS01545
  • product: RNA-binding domain-containing protein
  • replicon: chromosome
  • strand: -
  • coordinates: 249281..250795
  • length: 1515
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NZ_CP018136 (249281..250795) NCBI
  • BioCyc: BMJ42_RS01545 BioCyc
  • MicrobesOnline:
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    ATGAGAAAATACGATATACCAAAATTGTTATTATCAGGGGAGAACCAAGGTGTTGAATTC
    AAAGAAGCTAAAAATTCTTTCCCTAAAGACGGTATGAAAACAATTTGTTCCTTCGCTAAT
    ACAAATAATGGTCTGTTAATTCTAGGTGTCTCAGAGAATACAAAGAATAAAGATTTTTAT
    ATTTCTGGAGTTAATGATCCCGATAAAGTACTGGACGAATTATATAGTTTACTTAATAAC
    CCTAATAAAATTAATAGAAATGTGATTAATGAAGAAAGTGTTGAAGTCGTAAATATAAAA
    GGAAAAGAGATTGTCATTATCCCTGTTAACAAGGTAGACTACAAGGATAAACCTATATAT
    CTTAATGACAACATAGCATCTACCTATTTTCGTCAGGGGACTGGTGATTTTAGGTGTTCA
    CAAGAGCAAATCAACTCTATGTTAAGAGATTCCGCTAAGGAAAGTTTTGATAGCACACTT
    ATTCAGGATTTTTCTATTTTAGACTTAGATACAGAAACAATAAAGCTATATAGAGAAAAA
    TTTGATAATATAAATGCGGAGCACCCTTTTTCAAAGTTGGATAACGAACAATTTTTAATA
    AAAATAAATGCTTTACGAAGAGATCGCAAGGACGATAAAATAAAGCCAACAGTTGCTGGA
    CTATTAATTTTTGGTACACATAATTCAATAAAAGAGTTTATTCCACACTATAACGTAGAA
    TATGTTCTAAAAGAGTTTTCTGAAAACAATCGCTTTAAAGATCGTGTGATTTATGATGGT
    ACATGGGGGGAAGATAATCTTTTTAATTTCTTTTACCTAGTTATTGAAAAATTATATCTA
    ACTTTAAATGACAACTCTAACATTCAAGAAAATTCTATGAATAGAATTGGAATTTCAAAA
    TTACGAATTGCAATTCGTGAGGCATTCATTAATAGCCTTATTCATAGCGACTATAAAAGC
    GAAAAAGGGATAATGATAATTAGATATCCCGACAGGTATATATTCACAAATGGCGGAACA
    CTTAGAATTGACATAAAGGACTTTTTTAGTGGGGCACATTCTGATCCAAGAAACTACTTA
    ATACAAGAAATTTTTAGATTTTTAAATTTATGTGAAAAAGCGGGAACTGGTATACCCAAA
    ATAATGGAAGCAGTTAAAGAGAGTCATTTAAAATATCCCAATTTACGAACTGAATTAGAC
    TCAGTTGAATTTACATTATGGGATACTTCCCTTATAGATAATCTGGATATTGATAACGAA
    TATGAGAAAAAGATATTAGAGTTAATAATCGAACACCGTTTCGTAACAAGAGAGGCTTTG
    GAAGAAAAACTAAAAATCCACAAAAATACAATTTTAAAATATTTAAAAAAATTAGTGGAA
    AAACAAGCTATCGATAAATTCAAATCTGGTAGACAATACGTATACTTTATTACACAAAAC
    CAAGATCCTGAATTTCAAAAATATAACCACATTAATGCTATGTATTCTTTACTGGAAGAA
    ATAAAACGAAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1515

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: BMJ42_RS01545 [old locus tag: BMJ42_00288 ]
  • symbol: BMJ42_RS01545
  • description: RNA-binding domain-containing protein
  • length: 504
  • theoretical pI: 6.62259
  • theoretical MW: 59009.9
  • GRAVY: -0.522817

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Cations and iron carrying compounds copper transport repressor, CopY/TcrY family (TIGR02698; HMM-score: 17.9)
    Signal transduction Regulatory functions DNA interactions copper transport repressor, CopY/TcrY family (TIGR02698; HMM-score: 17.9)
    and 2 more
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Other iron-sulfur cluster biosynthesis transcriptional regulator SufR (TIGR02702; HMM-score: 12.4)
    Signal transduction Regulatory functions DNA interactions iron-sulfur cluster biosynthesis transcriptional regulator SufR (TIGR02702; HMM-score: 12.4)
  • TheSEED: data available for Hungary19A-6
  • PFAM:
    AlbA (CL0441) AlbA_2; Putative DNA-binding domain (PF04326; HMM-score: 52.1)
    His_Kinase_A (CL0025) HATPase_c_4; Putative ATP-dependent DNA helicase recG C-terminal (PF13749; HMM-score: 44.9)
    and 10 more
    HTH (CL0123) Penicillinase_R; Penicillinase repressor (PF03965; HMM-score: 27.8)
    TrmB; Sugar-specific transcriptional regulator TrmB (PF01978; HMM-score: 21.9)
    HTH_11; HTH domain (PF08279; HMM-score: 19.9)
    Sulfolobus_pRN; Sulfolobus plasmid regulatory protein (PF05584; HMM-score: 19.4)
    TFIIE_alpha; TFIIE alpha subunit (PF02002; HMM-score: 18.4)
    HTH_DeoR; DeoR-like helix-turn-helix domain (PF08220; HMM-score: 17.9)
    HTH_24; Winged helix-turn-helix DNA-binding (PF13412; HMM-score: 17.7)
    Ribosomal_S25; S25 ribosomal protein (PF03297; HMM-score: 16.7)
    HTH_36; Helix-turn-helix domain (PF13730; HMM-score: 16.7)
    His_Kinase_A (CL0025) HATPase_c_2; Histidine kinase-like ATPase domain (PF13581; HMM-score: 13.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.7843
    • Cytoplasmic Membrane Score: 0.0909
    • Cell wall & surface Score: 0.0007
    • Extracellular Score: 0.1241
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.058141
    • TAT(Tat/SPI): 0.000585
    • LIPO(Sec/SPII): 0.003397
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_001233766 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MRKYDIPKLLLSGENQGVEFKEAKNSFPKDGMKTICSFANTNNGLLILGVSENTKNKDFYISGVNDPDKVLDELYSLLNNPNKINRNVINEESVEVVNIKGKEIVIIPVNKVDYKDKPIYLNDNIASTYFRQGTGDFRCSQEQINSMLRDSAKESFDSTLIQDFSILDLDTETIKLYREKFDNINAEHPFSKLDNEQFLIKINALRRDRKDDKIKPTVAGLLIFGTHNSIKEFIPHYNVEYVLKEFSENNRFKDRVIYDGTWGEDNLFNFFYLVIEKLYLTLNDNSNIQENSMNRIGISKLRIAIREAFINSLIHSDYKSEKGIMIIRYPDRYIFTNGGTLRIDIKDFFSGAHSDPRNYLIQEIFRFLNLCEKAGTGIPKIMEAVKESHLKYPNLRTELDSVEFTLWDTSLIDNLDIDNEYEKKILELIIEHRFVTREALEEKLKIHKNTILKYLKKLVEKQAIDKFKSGRQYVYFITQNQDPEFQKYNHINAMYSLLEEIKRK

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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