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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 08-MAR-2025

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae SP49
  • locus tag: BMJ42_RS10360 [old locus tag: BMJ42_01966 ]
  • pan locus tag?: PNEUPAN003537000
  • symbol: BMJ42_RS10360
  • pan gene symbol?: phnU
  • synonym:
  • product: ABC transporter permease

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: BMJ42_RS10360 [old locus tag: BMJ42_01966 ]
  • symbol: BMJ42_RS10360
  • product: ABC transporter permease
  • replicon: chromosome
  • strand: +
  • coordinates: 1869206..1870900
  • length: 1695
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NZ_CP018136 (1869206..1870900) NCBI
  • BioCyc: BMJ42_RS10360 BioCyc
  • MicrobesOnline:
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    ATGAGAAAGAGTCTAAACTGGAAAGATTGGCTCATAAGATTAGGAGTTTTATGGCTAATC
    TTTGCCCTGATTATTTATCCAAATATTGAACTTTTGTCTGGAGTGTTTTATAAAAATGGT
    TCATTTACTCTAGAGGCATTCAATAAGATTATACACTCTCAGAGAGCGATGAGTAGTATA
    TTTAATAGCTTTATTTTGGCGATTTCAATGGTCTTTACTGTAAATATTGTTGGGACATTG
    ATTGTTCTACTCACAGAGTACTGGGATATTAGGGGTTCAAAAATACTTAAATTAGGTTAT
    ATGAGCTCTCTAGTATATGGAGGAATTGTATTAGCGACAGGATATAAATTTGTTTATGGC
    GCTAATGGTCTTGTAACTAAAACGCTCTCAAGTATAATTCCAGGTCTTGCCCCTAACTGG
    TTTCAAGGATTTGGTGCAGTATTGTTTATTATGACATTTGCTTGTACCTCAAATCACATA
    ATGTTTTTAACAAATGCAGTTCGTAGTGTTGATTATCATACAATTGAAGCAGCTAAAAAT
    ATGGGTGCAAGTCCTTTAAAAGTTTTCTTTAGTGTGGTTTTTCCAACTTTTAAACCTACG
    TTATTTGCCTTAACCATCTTAACTTTTTTGACAGGTCTTTCAGCAGTTTCTGCTCCTTTG
    ATAGTAGGGGGGAAAGATTTTCAAACTATTAACCCATTGATTATCAGTTTCGCTAAAACT
    ACAAGTTCGAGAGATTTAGCAGCTTTACTAGCTATCATGTTAGGTTTAGCAACTATTCTA
    TTATTGACACTTTTGAATCATGTCGAAAAAGGAGGTAATTATGTATCTGTTTCGAAAACC
    AAGGCTAGTATTAAGAAGCAGATAATTTCTTCTCCATTATGGAATACTCTTGCTCACATT
    GTTGCGTATGTATTGTTTGCAATCTATATGTTACCAATAGTTTTGATAATTCTATACTCG
    TTTACAGACTCGTTGACGATCAAGACGGGAACTTTAGATCTATCTAAATTTACGTTAGCG
    AACTATGCTAATTTATTTACAGATGCTCAATCATTTCGTCCTTACCTAGTCAGCGTTGTT
    TATGCAATTTTAGCTGCGGTAATTGCTACAATTATAGCAATAGTAATTTCACGTATTGTA
    CATAAAAACAAGAGTAAGTTCGATAAATTCTTTGAGTATGGTGCACTAATACCATGGATA
    TTGCCAGGTACATTGATTGCACTAGGATTAATGTTCACTTATAATATACCTCATTTAATA
    CTATTTAATTTAGTTTTAGTAGGAACAGTAATTATTTTACTTATTGCATATACTATTCAA
    AAATTACCATTTTCTTATAGAATGATTCGGGCTGTATTTTTCAGTATAGATAATGATATG
    GAAGAAGCAGCACGTAGTATGGGTGCATCTAGTTTCTACACTATGGTGCGAGTTATTATA
    CCGTATATTTTACCAGTCGTATTATCAGTAGTTGTGTTAAACTTTAATTCTTTATTATCT
    GACTATGACTTATCTGTATTCTTGTACCATCCACTTTTCCAACCATTGGGAATCGTTATT
    AAACAGTCTACTGATGAAACAGCAACTTTAAATGCACAGGCAATGATGTTTGTTTATTCT
    GTAATTTTAATGATTATGTCTAGTGCAGCTCTTTATTTATCAAGCCTATTCCAAGGTAAA
    CGAGGTAAGAGATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1695

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: BMJ42_RS10360 [old locus tag: BMJ42_01966 ]
  • symbol: BMJ42_RS10360
  • description: ABC transporter permease
  • length: 564
  • theoretical pI: 10.0934
  • theoretical MW: 62585.2
  • GRAVY: 0.796277

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Amino acids, peptides and amines putative 2-aminoethylphosphonate ABC transporter, permease protein (TIGR03262; HMM-score: 114.9)
    and 10 more
    Metabolism Transport and binding proteins Anions sulfate ABC transporter, permease protein CysT (TIGR02139; HMM-score: 77.9)
    2-aminoethylphosphonate ABC transport system, membrane component PhnV (TIGR03255; HMM-score: 77.4)
    NifC-like ABC-type porter (TIGR01581; HMM-score: 76.8)
    Metabolism Transport and binding proteins Anions molybdate ABC transporter, permease protein (TIGR02141; HMM-score: 76.7)
    Metabolism Transport and binding proteins Anions sulfate ABC transporter, permease protein (TIGR00969; HMM-score: 69.3)
    2-aminoethylphosphonate ABC transporter, permease protein (TIGR03226; HMM-score: 67.7)
    Metabolism Transport and binding proteins Anions phosphonate ABC transporter, permease protein PhnE (TIGR01097; HMM-score: 23.5)
    Metabolism Transport and binding proteins Anions sulfate ABC transporter, permease protein CysW (TIGR02140; HMM-score: 20.2)
    Metabolism Transport and binding proteins Anions phosphate ABC transporter, permease protein PstC (TIGR02138; HMM-score: 16.4)
    choline ABC transporter, permease protein (TIGR03416; HMM-score: 14)
  • TheSEED: data available for Hungary19A-6
  • PFAM:
    BPD_transp_1 (CL0404) BPD_transp_1; Binding-protein-dependent transport system inner membrane component (PF00528; HMM-score: 67.4)
    and 2 more
    no clan defined TM_helix; Conserved TM helix (PF05552; HMM-score: 12.5)
    Glycophorin_A; Glycophorin A (PF01102; HMM-score: 6.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 12
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 1
    • Cell wall & surface Score: 0
    • Extracellular Score: 0
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.085555
    • TAT(Tat/SPI): 0.000351
    • LIPO(Sec/SPII): 0.006977
  • predicted transmembrane helices (TMHMM): 12

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_001232290 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MRKSLNWKDWLIRLGVLWLIFALIIYPNIELLSGVFYKNGSFTLEAFNKIIHSQRAMSSIFNSFILAISMVFTVNIVGTLIVLLTEYWDIRGSKILKLGYMSSLVYGGIVLATGYKFVYGANGLVTKTLSSIIPGLAPNWFQGFGAVLFIMTFACTSNHIMFLTNAVRSVDYHTIEAAKNMGASPLKVFFSVVFPTFKPTLFALTILTFLTGLSAVSAPLIVGGKDFQTINPLIISFAKTTSSRDLAALLAIMLGLATILLLTLLNHVEKGGNYVSVSKTKASIKKQIISSPLWNTLAHIVAYVLFAIYMLPIVLIILYSFTDSLTIKTGTLDLSKFTLANYANLFTDAQSFRPYLVSVVYAILAAVIATIIAIVISRIVHKNKSKFDKFFEYGALIPWILPGTLIALGLMFTYNIPHLILFNLVLVGTVIILLIAYTIQKLPFSYRMIRAVFFSIDNDMEEAARSMGASSFYTMVRVIIPYILPVVLSVVVLNFNSLLSDYDLSVFLYHPLFQPLGIVIKQSTDETATLNAQAMMFVYSVILMIMSSAALYLSSLFQGKRGKR

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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