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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 15-OCT-2021

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae SP49
  • locus tag: BMJ42_RS10615 [old locus tag: BMJ42_02014 ]
  • pan locus tag?: PNEUPAN003572000
  • symbol: BMJ42_RS10615
  • pan gene symbol?: rmuC
  • synonym:
  • product: DNA recombination protein RmuC

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: BMJ42_RS10615 [old locus tag: BMJ42_02014 ]
  • symbol: BMJ42_RS10615
  • product: DNA recombination protein RmuC
  • replicon: chromosome
  • strand: -
  • coordinates: 1917185..1918441
  • length: 1257
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NZ_CP018136 (1917185..1918441) NCBI
  • BioCyc: BMJ42_RS10615 BioCyc
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_1778 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    ATGGAAAGTTTACTTATTCTATTATTAATTGCCAACCTAGCTGGTCTCTTTCTGATTTGG
    CAAAGACAGGATAGGCAGGAGAAACACTTAAGTAAGAGCTTGGAGGATCAGGCAGATCAT
    TTGTCAGACCAGTTGGATTACCGCTTTGACCAAGCCAGACAAGCCAGCCAGTTAGACCAA
    AAAGATTTGGAAGTGGCTGTCAGCGACCGTTTGCAAGAAGTGCGGATTGAATTGCACCAA
    GGCCTGACCCAAGTCCGTCAAGAAATGACAGATAATCTCCTCCAAACTAGAGACAAGACA
    GACCAACGTCTCCAAGCCTTGCAGGAATCAAATGAGCAACGTTTGGAACAAATGCGCCAG
    ACGGTCGAGGAAAAACTAGAAAAGACCTTGCAGACACGCTTACAGGCTTCCTTTGAGACA
    GTTTCTAAACAACTGGAGTCTGTCAATCGTGGTCTTGGAGAAATGCAGACAGTTGCCCGT
    GATGTCGGAGCTCTTAACAAGGTTCTCTCTGGAACCAAGACGCGAGGGATTCTGGGAGAA
    TTGCAACTGGGGCAAATTATTGAAGACATCATGACACCTGCCCAGTACGAACGAGAATAC
    GCAACGGTTGAAAACTCTAGTGAACGAGTGGAGTATGCCATCAAGTTACCCGGACAAGGC
    GACCAAGAATACGTCTACCTACCAATTGACTCTAAGTTTCCACTGGCAGATTATTACCGC
    TTAGAAGAAGCCTATGAAGTAGGTGACAAGGATGAAATCGAACGCTGTCGTAAGTCACTC
    CTAGCAAGTGTCAAGCGTTTTGCTAGGGATATTAGGAACAAGTACATAGCACCACCTCGG
    ACGACCAATTTTGGAGTTTTGTTTGTTCCGACAGAAGGTCTCTACTCAGAAATCGTCCGC
    AATCCGGTCTTCTTTGATGATTTGAGACGGGAAGAACAGATTATCGTTGCAGGACCAAGT
    ACCCTATCAGCCCTTCTTAACTCCCTATCAGTTGGTTTCAAGACCCTTAATATCCAAAAG
    AGTGCCGACCATATCAGCAAGACTCTTGCCAGTGTCAAGACCGAGTTTGGCAAGTTTGGT
    GGTATTCTGGTCAAGGCACAAAAACATCTCCAACATGCCTCTGGCAATATTGATGAATTA
    TTAAACCGTCGTACCATAGCTATCGAGCGGACGCTCCGTCACATTGAGTTGTCAGAAGGC
    GAGCCTGCGCTTGATCTACTCCATTTTCAAGAAAATGAGGAAGAATATGAAGATTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1257

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: BMJ42_RS10615 [old locus tag: BMJ42_02014 ]
  • symbol: BMJ42_RS10615
  • description: DNA recombination protein RmuC
  • length: 418
  • theoretical pI: 4.85759
  • theoretical MW: 47945.7
  • GRAVY: -0.557177

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Fatty acid and phospholipid metabolism Biosynthesis poly(hydroxyalkanoate) granule-associated protein (TIGR01837; HMM-score: 10.5)
    and 1 more
    Cellular processes Cellular processes Sporulation and germination sporulation integral membrane protein YtvI (TIGR02872; HMM-score: 6.9)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • PFAM:
    PDDEXK (CL0236) RmuC; RmuC family (PF02646; HMM-score: 237.9)
    and 13 more
    no clan defined Apolipoprotein; Apolipoprotein A1/A4/E domain (PF01442; HMM-score: 20.6)
    Baculo_PEP_C; Baculovirus polyhedron envelope protein, PEP, C terminus (PF04513; HMM-score: 15.1)
    HTH (CL0123) DUF2089; Protein of unknown function (DUF2089) (PF09862; HMM-score: 11.1)
    no clan defined Sipho_Gp157; Siphovirus Gp157 (PF05565; HMM-score: 10.3)
    Exonuc_VII_L; Exonuclease VII, large subunit (PF02601; HMM-score: 9.7)
    DUF4446; Protein of unknown function (DUF4446) (PF14584; HMM-score: 7.5)
    DUF1690; Protein of Unknown function (DUF1690) (PF07956; HMM-score: 7.4)
    DUF948; Bacterial protein of unknown function (DUF948) (PF06103; HMM-score: 7.3)
    ZYG-11_interact; Interactor of ZYG-11 (PF05884; HMM-score: 7.2)
    Phasin; Poly(hydroxyalcanoate) granule associated protein (phasin) (PF05597; HMM-score: 6.8)
    GT-B (CL0113) FUT8_N_cat; Alpha-(1,6)-fucosyltransferase N- and catalytic domains (PF19745; HMM-score: 6.5)
    Perilipin_sf (CL0718) Perilipin; Perilipin family (PF03036; HMM-score: 5.2)
    no clan defined Prominin; Prominin (PF05478; HMM-score: 4.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helix: 1
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.086258
    • TAT(Tat/SPI): 0.006389
    • LIPO(Sec/SPII): 0.078812
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000444678 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MESLLILLLIANLAGLFLIWQRQDRQEKHLSKSLEDQADHLSDQLDYRFDQARQASQLDQKDLEVAVSDRLQEVRIELHQGLTQVRQEMTDNLLQTRDKTDQRLQALQESNEQRLEQMRQTVEEKLEKTLQTRLQASFETVSKQLESVNRGLGEMQTVARDVGALNKVLSGTKTRGILGELQLGQIIEDIMTPAQYEREYATVENSSERVEYAIKLPGQGDQEYVYLPIDSKFPLADYYRLEEAYEVGDKDEIERCRKSLLASVKRFARDIRNKYIAPPRTTNFGVLFVPTEGLYSEIVRNPVFFDDLRREEQIIVAGPSTLSALLNSLSVGFKTLNIQKSADHISKTLASVKTEFGKFGGILVKAQKHLQHASGNIDELLNRRTIAIERTLRHIELSEGEPALDLLHFQENEEEYED

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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