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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 17-DEC-2017

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae Xen35
  • locus tag: CXP32_02430 [new locus tag: CXP32_RS02430 ]
  • pan locus tag?: PNEUPAN001361000
  • symbol: CXP32_02430
  • pan gene symbol?: salL
  • synonym:
  • product: DNA-directed RNA polymerase subunit delta

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: CXP32_02430 [new locus tag: CXP32_RS02430 ]
  • symbol: CXP32_02430
  • product: DNA-directed RNA polymerase subunit delta
  • replicon: chromosome
  • strand: +
  • coordinates: 462127..462975
  • length: 849
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: CP025256 (462127..462975) NCBI
  • BioCyc:
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_0431 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    ATGAATAATAATTTACTGGTATTACAATCAGACTTTGGTCTGGTTGATGGTGCGGTATCG
    GCTATGATTGGAGTGGCTTTAGAAGAGTCTCCAACCTTAAAAATACATCACTTGACGCAC
    GATATCACGCCTTATAATATTTTTGAGGGGAGCTATCGTCTCTTTCAGACGGTGGATTAC
    TGGCCTGAGGGAACGACGTTTGTATCGGTTGTCGATCCAGGTGTCGGTTCGAAACGTAAG
    AGTGTAGTTGCCAAGACTGCAAAAAATCAATACATTGTCACGCCAGATAATGGGACGCTT
    TCCTTTATCAAGAAACACGTTGGCATTGTAGCCATTCGTGAGATTTCTGAGGTGGCCAAT
    AGGCGTCAAAACACAGAGCATTCTTATACCTTCCACGGTCGTGATGTCTATGCCTATACT
    GGTGCTAAACTGGCCAGTGGTCACATTACTTTTGAGGAAGTAGGGCCAGAGCTCAGTGTG
    GAACAGATTGTAGAGCTTCCAGTCGTAGCGACCATCATAGAAGATCATCTGGTGAAGGGA
    GCCATTGATATTCTGGATGTGCGTTTCGGTTCGCTTTGGACCTCTATCACACGGGAAGAA
    TTTTACAAGCTGGAACCAGAATTTGGTGATCGTTTTGAAGTGACCATCTATCATGCTGAT
    ATGCTGGTCTATCAAAATCAGGTTGTCTATGGCAAATCATTTGCAGATGTGAGAATTGGG
    CAACCCATCCTTTACATCAACTCTCTCTATCGTTTAGGTTTGGCTATCAACCAAGGTTCC
    TTTGCCAAGGCCTATAATGTAGGTGTCGGTTCATCTTGGACCATTGAAATAAAGAAAATA
    GAAGGATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    849

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: CXP32_02430 [new locus tag: CXP32_RS02430 ]
  • symbol: CXP32_02430
  • description: DNA-directed RNA polymerase subunit delta
  • length: 282
  • theoretical pI: 5.81435
  • theoretical MW: 31450.5
  • GRAVY: -0.027305

⊟Function[edit | edit source]

  • ⊞TIGRFAM:
    Cellular processes Cellular processes Biosynthesis of natural products adenosyl-fluoride synthase (TIGR04507; EC 2.5.1.63; HMM-score: 92.2)
    and 1 more
    Metabolism Amino acid biosynthesis Aspartate family O-succinylhomoserine (thiol)-lyase (TIGR02080; EC 2.5.1.48; HMM-score: 12)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • ⊞PFAM:
    no clan defined SAM_HAT_N; SAM hydroxide adenosyltransferase N-terminal domain (PF01887; HMM-score: 148.3)
    and 1 more
    SAM_HAT_C; SAM hydroxide adenosyltransferase C-terminal domain (PF20257; HMM-score: 65.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.012687
    • TAT(Tat/SPI): 0.001515
    • LIPO(Sec/SPII): 0.002564
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: AUF84346 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MNNNLLVLQSDFGLVDGAVSAMIGVALEESPTLKIHHLTHDITPYNIFEGSYRLFQTVDYWPEGTTFVSVVDPGVGSKRKSVVAKTAKNQYIVTPDNGTLSFIKKHVGIVAIREISEVANRRQNTEHSYTFHGRDVYAYTGAKLASGHITFEEVGPELSVEQIVELPVVATIIEDHLVKGAIDILDVRFGSLWTSITREEFYKLEPEFGDRFEVTIYHADMLVYQNQVVYGKSFADVRIGQPILYINSLYRLGLAINQGSFAKAYNVGVGSSWTIEIKKIEG

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Expression data[edit | edit source]

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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