From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 17-FEB-2021

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae Xen35
  • locus tag: CXP32_RS01945 [old locus tag: CXP32_01945 ]
  • pan locus tag?: PNEUPAN001249000
  • symbol: CXP32_RS01945
  • pan gene symbol?: fni
  • synonym:
  • product: type 2 isopentenyl-diphosphate Delta-isomerase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: CXP32_RS01945 [old locus tag: CXP32_01945 ]
  • symbol: CXP32_RS01945
  • product: type 2 isopentenyl-diphosphate Delta-isomerase
  • replicon: chromosome
  • strand: +
  • coordinates: 364108..365118
  • length: 1011
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NZ_CP025256 (364108..365118) NCBI
  • BioCyc:
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_0349 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATGACGACAAATCGTAAGGACGAGCATATCCTCTATGCCCTTGAGCAGAAAAGTTCCTAT
    AATAGCTTTGATGAGGTGGAGCTGATTCATTCTTCCTTGCCTCTTTACAATCTGGATGAA
    ATCGATCTTTCGACAGAGTTTGCTGGTCGAAAGTGGGACTTTCCTTTTTATATCAATGCC
    ATGACTGGTGGAAGTAATAAGGGAAGAGAAATCAATCAAAAGCTGGCTCAGGTGGCGGAA
    TCCTGTGGTATTTTATTTGTAACGGGTTCTTATAGCGCAGCCCTCAAAAATCCAACGGAT
    GATTCTTTTTCTGTCAAGTCTAGTCATCCCAATCTCCTCCTTGGAACCAATATTGGATTG
    GACAAGCCTGTCGAGTTAGGACTTCAGACTGTAGAAGAGATGAATCCTGTTCTATTGCAA
    GTGCATGTCAATGTCATGCAGGAATTACTCATGCCCGAGGGAGAAAGGAAGTTTAGAAGC
    TGGCAATCGCATCTAGCAGATTATAGCAAGCAAATTCCCGTTCCTATTGTCCTCAAGGAA
    GTGGGCTTTGGAATGGATGCCAAGACAATCGAAAGAGCCTATGAATTCGGTGTTCGTACA
    GTGGACCTATCGGGTCGTGGTGGCACCAGCTTTGCCTATATCGAAAACCGTCGTAGTGGC
    CAGCGTGATTACCTCAATCAATGGGGTCAGTCTACCATGCAGGCCCTTCTCAATGCCCAA
    GAATGGAAAGATAAGGTCGAACTCTTGGTTAGTGGAGGGGTTCGGAATCCGCTGGATATG
    ATTAAGTGCTTGGTTTTTGGTGCTAAGGCTGTGGGATTGTCACGAACCGTTCTGGAATTG
    GTTGAAACCTACACAGTTGAAGAAGTGATTGGCATTGTCCAAGGCTGGAAAGCAGATCTA
    CGCTTGATTATGTGTTCCCTTAACTGTGCCACCATAGCAGATCTACAAAAAGTAGACTAT
    CTTCTTTATGGAAAATTAAAAGAAGCAAAGGATCAGATGAAAAAGGCGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1011

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: CXP32_RS01945 [old locus tag: CXP32_01945 ]
  • symbol: CXP32_RS01945
  • description: type 2 isopentenyl-diphosphate Delta-isomerase
  • length: 336
  • theoretical pI: 5.48809
  • theoretical MW: 37686.9
  • GRAVY: -0.234226

⊟Function[edit | edit source]

  • reaction:
    EC 5.3.3.2?  ExPASy
    Isopentenyl-diphosphate Delta-isomerase Isopentenyl diphosphate = dimethylallyl diphosphate
  • TIGRFAM:
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Other isopentenyl-diphosphate delta-isomerase, type 2 (TIGR02151; EC 5.3.3.2; HMM-score: 367.5)
    and 2 more
    heme/flavin dehydrogenase, mycofactocin system (TIGR03966; EC 1.-.-.-; HMM-score: 25.2)
    Metabolism Energy metabolism Other L-lactate oxidase (TIGR02708; EC 1.1.3.-; HMM-score: 16.2)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • PFAM:
    TIM_barrel (CL0036) FMN_dh; FMN-dependent dehydrogenase (PF01070; HMM-score: 98)
    and 2 more
    Glu_synthase; Conserved region in glutamate synthase (PF01645; HMM-score: 25.7)
    IMPDH; IMP dehydrogenase / GMP reductase domain (PF00478; HMM-score: 13.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.003322
    • TAT(Tat/SPI): 0.000343
    • LIPO(Sec/SPII): 0.000458
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000210618 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MTTNRKDEHILYALEQKSSYNSFDEVELIHSSLPLYNLDEIDLSTEFAGRKWDFPFYINAMTGGSNKGREINQKLAQVAESCGILFVTGSYSAALKNPTDDSFSVKSSHPNLLLGTNIGLDKPVELGLQTVEEMNPVLLQVHVNVMQELLMPEGERKFRSWQSHLADYSKQIPVPIVLKEVGFGMDAKTIERAYEFGVRTVDLSGRGGTSFAYIENRRSGQRDYLNQWGQSTMQALLNAQEWKDKVELLVSGGVRNPLDMIKCLVFGAKAVGLSRTVLELVETYTVEEVIGIVQGWKADLRLIMCSLNCATIADLQKVDYLLYGKLKEAKDQMKKA

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=CXP32_RS01945&oldid=171901"