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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 14-DEC-2020

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae NCTC7466
  • locus tag: DQM66_RS09940 [old locus tag: NCTC7466_01912 ]
  • pan locus tag?: PNEUPAN003801000
  • symbol: DQM66_RS09940
  • pan gene symbol?: —
  • synonym:
  • product: LysM peptidoglycan-binding domain-containing protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: DQM66_RS09940 [old locus tag: NCTC7466_01912 ]
  • symbol: DQM66_RS09940
  • product: LysM peptidoglycan-binding domain-containing protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1852515..1853657
  • length: 1143
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NZ_LS483374 (1852515..1853657) NCBI
  • BioCyc:
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_1874 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    ATGAAGAAAAGAATGTTATTAGCGTCAACAGTAGCCTTGTCATTTGCCCCAGTATTGGCA
    ACTCAAGCAGAAGAAGTTCTTTGGACTGCACGTAGTGTTGAGCAAATCCAAAACGATTTG
    ACTAAAACGGACAACAAAACAAGTTATACCGTACAGTATGGTGATACTTTGAGCACCATT
    GCAGAAGCCTTGGGTGTAGATGTCACAGTGCTTGCGAATCTGAACAAAATCACTAATATG
    GACTTGATTTTCCCAGAAACTGTTTTGACAACGACTGTCAATGAAGCAGAAGAAGTAACA
    GAAGTTGAAATCCAAACACCTCAAGCAGACTCTAGTGAAGAAGTGACAACTGCGACAGCA
    GATTTGACCACTAATCAAGTGACCGTTGATGATCAAACTGTTCAGGTTGCAGACCTTTCT
    CAACCAATTGCAGAAGCTCCAAAAGAAGTAGCATCAAGTTCAGAAGTTACAAAGACAGTG
    ATTGCTTCTGAAGAAGTGGCACCATCTACGGGCACTTCTGTCCCAGAGGAGCAAACGGCC
    GAAACAAGCAGTGCAGTTGCAGAAGAAGCTCCTCAGGAAACGACTCCAGCTGAGAAGCAG
    GAAACACAAACAAGCCCTCAAGCTGCATCAGCAGTGGAAGCAACTACAACAAGTTCAGAA
    GCAAAAGAAGTAGCATCATCAAATGGAGCTACAGCAGCAGTTTCTACTTATCAACCAGAA
    GAAACGAAAATAATTTCAACAACTTACGAGGCACCAGCTGCGCCCGATTATGCTGGACTT
    GCAGTAGCAAAATCTGAAAATGCAGGTCTTCAACCACAAACAGCTGCCTTTAAAGAAGAA
    ATTGCTAACTTGTTTGGCATTACATCCTTTAGTGGTTATCGTCCAGGAGACAGTGGAGAT
    CACGGAAAAGGTTTGGCTATCGATTTTATGGTACCAGAACGTTCAGAATTAGGGGATAAG
    ATTGCGGAATATGCTATTCAAAATATGGCCAGCCGTGGCATTAGTTACATCATCTGGAAA
    CAACGTTTCTATGCTCCATTCGATAGCAAATATGGGCCAGCTAACACTTGGAACCCAATG
    CCAGACCGTGGTAGTGTGACAGAAAATCACTATGATCACGTTCACGTTTCAATGAATGGA
    TAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1143

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: DQM66_RS09940 [old locus tag: NCTC7466_01912 ]
  • symbol: DQM66_RS09940
  • description: LysM peptidoglycan-binding domain-containing protein
  • length: 380
  • theoretical pI: 4.01291
  • theoretical MW: 40565.3
  • GRAVY: -0.362105

⊟Function[edit | edit source]

  • TIGRFAM:
    Cellular processes Cellular processes Sporulation and germination spore coat assembly protein SafA (TIGR02899; HMM-score: 16.8)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • PFAM:
    LysM (CL0187) LysM; LysM domain (PF01476; HMM-score: 38.1)
    and 1 more
    no clan defined Macoilin; Macoilin family (PF09726; HMM-score: 4.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • SignalP: Signal peptide SP(Sec/SPI) length 23 aa
    • SP(Sec/SPI): 0.989565
    • TAT(Tat/SPI): 0.001561
    • LIPO(Sec/SPII): 0.006498
    • Cleavage Site: CS pos: 23-24. TQA-EE. Pr: 0.8294
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000746982 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MKKRMLLASTVALSFAPVLATQAEEVLWTARSVEQIQNDLTKTDNKTSYTVQYGDTLSTIAEALGVDVTVLANLNKITNMDLIFPETVLTTTVNEAEEVTEVEIQTPQADSSEEVTTATADLTTNQVTVDDQTVQVADLSQPIAEAPKEVASSSEVTKTVIASEEVAPSTGTSVPEEQTAETSSAVAEEAPQETTPAEKQETQTSPQAASAVEATTTSSEAKEVASSNGATAAVSTYQPEETKIISTTYEAPAAPDYAGLAVAKSENAGLQPQTAAFKEEIANLFGITSFSGYRPGDSGDHGKGLAIDFMVPERSELGDKIAEYAIQNMASRGISYIIWKQRFYAPFDSKYGPANTWNPMPDRGSVTENHYDHVHVSMNG

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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