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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 06-JAN-2021
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae EF3030
- locus tag: EF3030_RS03125 [old locus tag: EF3030_03125 ]
- pan locus tag?: PNEUPAN001606000
- symbol: EF3030_RS03125
- pan gene symbol?: zmpB
- synonym:
- product: LPXTG cell wall anchor domain-containing protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: EF3030_RS03125 [old locus tag: EF3030_03125 ]
- symbol: EF3030_RS03125
- product: LPXTG cell wall anchor domain-containing protein
- replicon: chromosome
- strand: +
- coordinates: 594317..600259
- length: 5943
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NZ_CP035897 (594317..600259) NCBI
- BioCyc: EF3030_RS03125 BioCyc
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_0577 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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901
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1021
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5881
5941GTGTTTAAAAAAGACCGTTTTTCAATTCGTAAGATTAAGGGAGTTGTAGGCTCTGTATTT
CTTGGAAGCCTTTTGATGGCTCCTTCTGTAGTGGACGCAGCCACCTATCACTATGTAAAT
AAAGAGATTATTTCACAAGAAGCTAAAGATTTAATTCAGACAGGAAAGCCTGACAGGAAT
GAAGTTGTATATGGTTTGGTGTATCAAAAAGATCAGTTGCCTCAAACAGGGACAGAAGCA
TCTGTTTTGACAGCTTTTGGTTTGCTGACTGTTGGGAGCTTGCTTTTAATCTACAAGAGA
AAGAAAATTGCTAGCGTCTTTCTAGTTGGAGCTATGGGATTGGTAGTTCTTCCTAGTGCA
GAGGCTGTAGACCCAGTTGCGACCCTAGCGCTGGCTAGTCGAGAGGGTGTTGTTGAAATG
GATGGCTATCGCTATGTTGGTTATCTATCAGGTGACATCCTCAAAACGCTTGGCTTGGAC
ACTGTTTTAGAAGAAACCTCAGCAAAACCTGGAGAGGTGACTGTAGTCGAAGTTGAGACT
CCTCAATCAACAACAAATCAGGAGCAAGCTAGGACAGAAAACCAAGTAGTAGAGACAGAG
GAAGCTCCAAAAGAAGAAGCACCTAAAACAGAAGAAAGTCCAAAGGAAGAACCAAAATCG
GAGGTAAAACCTACTGACGACACCCTTCCTAAAGTAGAAGAGGGGAAAGAAGATTCAGCA
GAACCAGCTCCAGTTGAAGAAGTAGGTGGAGAAGTTGAGTCAAAATCAGAGGAAAAAGTA
GCAGTTAAGCCAGAAAGTCAACCATCAGACAAACCAGCTGAGGAATCAAAAGTTGAACAA
GCAGGTGAACCAGTCGCGCCAAGAGAAGACGAAAAGGCACCAGTCGAGCCAGAAAAGCAA
CCAGAAGCTCCTGAAGAAGAGAAGGCTGTAGAGGAAACACCGAAACAAGAAGATACACAG
CCAGAAGTAGTAGAAACAAAAGATGAGGCTGCTAATCAACCTGTTGAAGAACCAAAAGTT
GAAACGCCTGCTGTAGAAAAACAAACGGAACCAACAGAGGAACCAAAAGTTGAACAAGTA
GGTGAACCAGTCGAGCCAAGAGAAGACGAAAAGGCACCAGTCTCTCCAGAAAAGCAACCA
GAAGCTCCTGAAGAAGAGAAGACTGCGGAAGAAACACCGAAACAAGAAGATAAAATAAAG
GGTATTGGTACTAAAGAACCAGTTGATAAAAGTGAGTTAAATAATCAAATTGATAAAGCT
AGTTCAGTTTCTCCTACTGATTATTCTACAGCAAGTTACAATGCTCTTGGACCTGTTTTA
GAAACTGCAAAAGGTGTCTATGCTTCAGAGCCTGTAAAACAGCCTGAGGTAAATAGCGAG
ACAAAAGCTGAAAAAGTTGCAGCTAATACAGATGCTAAACAAAGTGAAGTAAATTCTGAG
ACTGCAAGTCTTAAAACAGCAATTTCTGGATTAAATACAGATAAAGTTGAACTCGAAAAT
CAACTTAAGATTGCACAGGGAAAAACTGAAACTGATTTCAGCATGGAATCTTGGACGGTT
TTGAGTACAGCTAAAAATAAAGCTCAGGAAGTAAAAGATAACGGAACAGCGACCCAAGAA
CAAATAAACGAAGCAGAGAAAAGTTTGAAAACAGCCCTTGCTGACTTATCTGTTGACAAA
ACAGCTTTGGGAAGCGCTATCGATACAGCTACCAAGAAAAATAAAGAGAACTATACAAAT
CAAACATGGGCAGAGTTAGAAACAGTTCTTACAGCAGCAAAATCTGTAAACACTAACGAG
TCTAAACAAAGTGAAGTTAATGAAGCTGTTGAAAAATTAACTGCAACTATTGAAAAATTG
GTTGAATTGTCTGAAAAGCCACGTTTGACTCTATCTATTGAAAAGAGAGACATAGATCGA
AAAGTTACGGTCACGTATACTTTGGAAAATCCAGCAAATACTCAAATAAAATCAATAACT
GCAACTCTGAAAAAAGGAGAGGAAGTTGTTAAGGATTTTGTTTTAACAGAAGAAAATCTT
AAAACTAATCATTTAACTGCTTTGTTTGAAAAGCTAGATTACTACAAAGAATACACTCTA
TCTACGGATATGGTATATAACAGAGGAAATGATGATGAGACGGAGAGTATTTCAGAAGAA
CTAATTCAGCTGAATCTTAAGAAACTAGAATTGAAAGATATCCAGACAGTCTCTCTGATG
AAATTTGAAGATGGTCAAGAAAGTCAGGTTACACACTTGTCTGATAAACCGACCGATTTG
AGTAAATTATACTTAAAAGTTACATCATCAACGTCTAAGGATGCTGTGTTAGCCGTTAGC
TCTATAGAAGAAGAGATTGTTGAAAATAAAAAAATCTTTAAAATTCATGCAGATACACCA
GAATTAGTAGTTCGTAAGAAAGATGGCAGTCTTTCTAAGGGATTTGACTATTACATGGAG
AGAGTTATCCCTCATGATGGTGATATTTATTATGATTTTAAAGACTTGATTTCAGCTATG
ACATCTAATCCTACAGGTACGTTTATTTTAGGGAGAGATATTTCCTCGCGTAATGTAAAA
CCGGATGGAAATGGAAAATCTTATATCAAAGGTGAATTTAAAGGAAAACTACTTGGTACA
AATGATAATGTTAGACACTCGATCTTTGACTTAGAATATCCATTGTTTGATACTATAAAA
TCAGGAGTCGTGAAAGATATTGATTTCAAGCATGTCAATATGGTATTCCCAGATAGCAAT
CAAGGAGATAACGTAGCAACAATTGCAAGAGTAATCAAAGATAAGACAAAAATTGAGAAT
GTTAATGTTGAAGGTTATCTCGAGGGTCGAGATCATGTAGCTGGTTTAGTTAATAATCTT
GAAGGTAATTCCGAAATTGAAAATATATCCTTTACAGGAAAGATTAAGTCTAAAGGTGGT
AATTCTATTACAGCAGGTATTGCAGGTAGAAATATCTTATCTCGTGTTAAACGTGCCTAT
GTAAATGCAAATATTGAAGTCCTTGGTTCAACGAATTCGAGTATGCTTGTTGCAGTAAAT
GGTACAACATTGAATGCTAGTGGAGGTTGGGGAGCCTGGGGAAGACTTACTGAGTCCGTT
GCTAAAGGGACGTTAGAAATTAAACGCAGTGGACAAGCTGGTGGAGTTACTGCAACAGTC
TGGCCTTATGGAGCAATTGATAAGGTTGTCAGCTATGCAAAAGTTACCAAAGGAAAAGAA
TTATTTGGGTCAGATGGTGATTTAAATAATAATTGGTTTATGCAAAAAATTAATAATATT
TTTGGTGTTCAAGGTATCAGCTCAGGTGACTCAGGGAATGATTCTAAGTTTAAGCGTATT
TCCGAGGAAGAAGCAAAGCAAAAGGTTGCCTCTTATAATATTACAGCTCCCAACTTGATG
AGCGACTCAAGTCTTTTGGTAGACAGACTCAATGAAAGTTGGAAAAATACTGATCAATTT
GAAAGTATACAGGATTATCAATCCCAAAACCAATTAATTTACCAGAACTTGACTAAATTT
ACTCCTTATTACAATAAAGAATTTATTGTTCATGAAGGAAATGCTCTCACTCCTGAACAG
GAAATATTGAAGACTAAGAAAATCAAATCGATTGTAGGGTTGAAAGGAACAGAGTTCGTT
GTAGATGGCAGTGATATTGATACTATCATGCTTCATTTTGAGGATGGTAGTCAGAAGCGA
TATAAGGTAACCTCTACTGGTAAGTTTTCGATAACTAATTTACCGGAATATCAGGTTGAA
GATTTAAATGTGGTGTATACATCAGAACATATAGTACATCCACTAGATTCGTCACTGATA
AATAACCTTGTTGAAGAATTGAAAAAAGTAGAATTGTATACAGAGTCTACTTACCAAGTT
CTAGGTATTGATAAAGATAATGCTAACAAATTGAATAGAACTAAGAGATTATTCTTAGAT
GAGTCATTAGATGCTGTTAAAACACAATTGCCTACCTTTGTAAAAACAATGTTTGAAAAT
GAGTGGTTGCACATCAATGGAGAATCTAGTGGAGCTGTCGCTGCTTTACGACAAAAAATC
ATGGATAATAAGACGGCTATATTGCTTGCTTTGACTTATATCAATCGTTATTATGATGTT
AAATTCTCAGACTATAATATTAAAAAACTGATGCTCTTTAAACCAACTTTCCATGGTGAA
AAGATTGATCTATTAGATCGATTAATCCGACTAGGATCATCTGGAGAAAATAGATTAAAA
GGTTCAGAAAATGCAGAAACGTTCAAGCAGTTATTTGCTAGCGAAACGAAGCAGAAGGAT
TTGGTGACTTATTTAGACTACAATCGCTCTTTGTTGACTAATTATCAAACAACAGGGGAA
TGGTTTAAAGAAACGACTAAGGATTATATTCAATTTGAGGAACGTCCATCCTTAGTAGAG
GAGATTAAAGATGCCAAATATCGAGTTTACGATAATTTAACCGCACCGTATTATCAAGGA
TATATCCTACCTCTCTTAACGTTGAAGAATACTCATTTAGCAATTTTATCGAACTATAGT
ACTATGACATTTGTCAGCCGTGAAAAACGCCCTAATTGGAAAAATGAAGATTTTGATAAG
TGGGTGAAATATGTAGCAACTGCTCATAGAAACCATGTTGATACTTGGTATAAGATTTTA
CCTGATAATATCAAAGGTAAAATGGTTAAAGAGAATGTTACTGCTGTTTGGGAAGGATTG
AGCATCCCAGGAAGTGAATGGGTAGACCAGAATGCTGTAGATAGAAAAGGAAGAGATTAC
GCCCCAGCTCGAGAATTCTTTAATCTTGTAGGTGGTCCTATGGGAGGTTGGTATGCTTAC
CATGGTTATGGTGCGCATGCTGGAGGAAGAAATCGGGTTAATTATGAGGTGTTTGATGTA
TTAAGTGAGTATGGTATATCGGTCTTTACTCATGAATTGACTCACGTTAATGATACTTGG
ATTTACTTAGGAGGGTATGGTAGACGTGAAAATATGGGACCTGAAGCTTATGCTCAGGGA
TTATTCCAGTCTCCTGTTCCAGGTCAGCCGGGTTGGGGGGCGCTTGGTCTCAATATGGCA
TTTGAAAGAAAAAATGATGGTGATCTAATTTATAATGCCTCCCCAACTCAATTTGAAAAT
AGGAAAGAGTTAGATAGTTATATGAAAAATTATAACGATACTCTCATGATGGTGGACTAC
TTGGAAGGAGATGCAGTTATCTCTAAAGGTAAAGAAGCTATTACTAAATGGTTTAAAAAA
GTTGAACCTAAGGTTGTTAGTCAAACAGCTCAGTATGATACGGTTCGTCAGTTGACTGCT
GAAGAGAAAGAAAAACTTTCTGTTTCTAGTGTTGATGATTTAGTTGATCAAGGATTAATG
TCAGACAGAGCTGTAGGAAATAATACCTATAATCCAGCTGATTTTGAAACAAGTTATATT
GCGATAGATTATATGACTGGTATTTATGGTGGAGGAAAGAATAGTGTAGGTTCACCAGGT
GCCTTGATGTTTAAACATAATACTTTCCGTATGTGGGGCTACTATGGTTTTGAAGAAGGT
GTTCTAGGATATGCTTCTAATAAATTTAAGCAAGCATCTAGAGATGAAGGTCATGCTGGA
CTTAGTGATAACTTTATTATTTCTAAGATTTCCAAAGGGGAATTTTTAACTATGGAAGCA
TTTAAAAAGGGATATTTTAAGAAAGTAGTAGAAGAGTTAAAAACTAAAGGTATTCGTCCT
GTTACTATCAATCAAAAAACATATAGCACCTTTGAAGAATTGCAAGAAGGATTTAAGCAG
GCTGTTGAAAGAGATTTGAAGAAAAATCAGTTAGATGAGAGGGAAACAAGAAACTTCAAA
TTCCAAGTTTTCAGACAACTTCTTCAACAAACAGATAGCTTTAAAACTTCTATCTTTAGA
TAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: EF3030_RS03125 [old locus tag: EF3030_03125 ]
- symbol: EF3030_RS03125
- description: LPXTG cell wall anchor domain-containing protein
- length: 1980
- theoretical pI: 4.81807
- theoretical MW: 221380
- GRAVY: -0.605152
⊟Function[edit | edit source]
- TIGRFAM: Cell envelope Other LPXTG cell wall anchor domain (TIGR01167; HMM-score: 26.3)
- TheSEED: data available for D39, Hungary19A-6, TIGR4
- PFAM: no clan defined Peptidase_M26_C; M26 IgA1-specific Metallo-endopeptidase C-terminal region (PF07580; HMM-score: 612.6)and 5 morePeptidase_M26_N; M26 IgA1-specific Metallo-endopeptidase N-terminal region (PF05342; HMM-score: 275.4)B_GA (CL0598) FIVAR; FIVAR domain (PF07554; HMM-score: 42.2)no clan defined Gram_pos_anchor; LPXTG cell wall anchor motif (PF00746; HMM-score: 29.8)YSIRK_signal; YSIRK type signal peptide (PF04650; HMM-score: 10)FlaC_arch; Flagella accessory protein C (FlaC) (PF05377; HMM-score: 9.1)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cellwall
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 0
- Cellwall Score: 10
- Extracellular Score: 0
- Internal Helices: 2
- SignalP: Signal peptide SP(Sec/SPI) length 33 aa
- SP(Sec/SPI): 0.98483
- TAT(Tat/SPI): 0.008282
- LIPO(Sec/SPII): 0.001095
- Cleavage Site: CS pos: 33-34. VDA-AT. Pr: 0.9782
- predicted transmembrane helices (TMHMM): 3
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_000472964 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MFKKDRFSIRKIKGVVGSVFLGSLLMAPSVVDAATYHYVNKEIISQEAKDLIQTGKPDRNEVVYGLVYQKDQLPQTGTEASVLTAFGLLTVGSLLLIYKRKKIASVFLVGAMGLVVLPSAEAVDPVATLALASREGVVEMDGYRYVGYLSGDILKTLGLDTVLEETSAKPGEVTVVEVETPQSTTNQEQARTENQVVETEEAPKEEAPKTEESPKEEPKSEVKPTDDTLPKVEEGKEDSAEPAPVEEVGGEVESKSEEKVAVKPESQPSDKPAEESKVEQAGEPVAPREDEKAPVEPEKQPEAPEEEKAVEETPKQEDTQPEVVETKDEAANQPVEEPKVETPAVEKQTEPTEEPKVEQVGEPVEPREDEKAPVSPEKQPEAPEEEKTAEETPKQEDKIKGIGTKEPVDKSELNNQIDKASSVSPTDYSTASYNALGPVLETAKGVYASEPVKQPEVNSETKAEKVAANTDAKQSEVNSETASLKTAISGLNTDKVELENQLKIAQGKTETDFSMESWTVLSTAKNKAQEVKDNGTATQEQINEAEKSLKTALADLSVDKTALGSAIDTATKKNKENYTNQTWAELETVLTAAKSVNTNESKQSEVNEAVEKLTATIEKLVELSEKPRLTLSIEKRDIDRKVTVTYTLENPANTQIKSITATLKKGEEVVKDFVLTEENLKTNHLTALFEKLDYYKEYTLSTDMVYNRGNDDETESISEELIQLNLKKLELKDIQTVSLMKFEDGQESQVTHLSDKPTDLSKLYLKVTSSTSKDAVLAVSSIEEEIVENKKIFKIHADTPELVVRKKDGSLSKGFDYYMERVIPHDGDIYYDFKDLISAMTSNPTGTFILGRDISSRNVKPDGNGKSYIKGEFKGKLLGTNDNVRHSIFDLEYPLFDTIKSGVVKDIDFKHVNMVFPDSNQGDNVATIARVIKDKTKIENVNVEGYLEGRDHVAGLVNNLEGNSEIENISFTGKIKSKGGNSITAGIAGRNILSRVKRAYVNANIEVLGSTNSSMLVAVNGTTLNASGGWGAWGRLTESVAKGTLEIKRSGQAGGVTATVWPYGAIDKVVSYAKVTKGKELFGSDGDLNNNWFMQKINNIFGVQGISSGDSGNDSKFKRISEEEAKQKVASYNITAPNLMSDSSLLVDRLNESWKNTDQFESIQDYQSQNQLIYQNLTKFTPYYNKEFIVHEGNALTPEQEILKTKKIKSIVGLKGTEFVVDGSDIDTIMLHFEDGSQKRYKVTSTGKFSITNLPEYQVEDLNVVYTSEHIVHPLDSSLINNLVEELKKVELYTESTYQVLGIDKDNANKLNRTKRLFLDESLDAVKTQLPTFVKTMFENEWLHINGESSGAVAALRQKIMDNKTAILLALTYINRYYDVKFSDYNIKKLMLFKPTFHGEKIDLLDRLIRLGSSGENRLKGSENAETFKQLFASETKQKDLVTYLDYNRSLLTNYQTTGEWFKETTKDYIQFEERPSLVEEIKDAKYRVYDNLTAPYYQGYILPLLTLKNTHLAILSNYSTMTFVSREKRPNWKNEDFDKWVKYVATAHRNHVDTWYKILPDNIKGKMVKENVTAVWEGLSIPGSEWVDQNAVDRKGRDYAPAREFFNLVGGPMGGWYAYHGYGAHAGGRNRVNYEVFDVLSEYGISVFTHELTHVNDTWIYLGGYGRRENMGPEAYAQGLFQSPVPGQPGWGALGLNMAFERKNDGDLIYNASPTQFENRKELDSYMKNYNDTLMMVDYLEGDAVISKGKEAITKWFKKVEPKVVSQTAQYDTVRQLTAEEKEKLSVSSVDDLVDQGLMSDRAVGNNTYNPADFETSYIAIDYMTGIYGGGKNSVGSPGALMFKHNTFRMWGYYGFEEGVLGYASNKFKQASRDEGHAGLSDNFIISKISKGEFLTMEAFKKGYFKKVVEELKTKGIRPVTINQKTYSTFEELQEGFKQAVERDLKKNQLDERETRNFKFQVFRQLLQQTDSFKTSIFR
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0577 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.
⊟Literature[edit | edit source]
⊟References[edit | edit source]
⊟Relevant publications[edit | edit source]
Damiana Chiavolini, Guido Memmi, Tiziana Maggi, Francesco Iannelli, Gianni Pozzi, Marco R Oggioni
The three extra-cellular zinc metalloproteinases of Streptococcus pneumoniae have a different impact on virulence in mice.
BMC Microbiol: 2003, 3;14
[PubMed:12841855] [WorldCat.org] [DOI] (I e)C E Blue, G K Paterson, A R Kerr, M Bergé, J P Claverys, T J Mitchell
ZmpB, a novel virulence factor of Streptococcus pneumoniae that induces tumor necrosis factor alpha production in the respiratory tract.
Infect Immun: 2003, 71(9);4925-35
[PubMed:12933834] [WorldCat.org] [DOI] (P p)