From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 30-NOV-2024

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae EF3030
  • locus tag: EF3030_RS06290 [old locus tag: EF3030_06290 ]
  • pan locus tag?: PNEUPAN002601000
  • symbol: EF3030_RS06290
  • pan gene symbol?: —
  • synonym:
  • product: ATP-binding protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: EF3030_RS06290 [old locus tag: EF3030_06290 ]
  • symbol: EF3030_RS06290
  • product: ATP-binding protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1206324..1209902
  • length: 3579
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NZ_CP035897 (1206324..1209902) NCBI
  • BioCyc: EF3030_RS06290 BioCyc
  • MicrobesOnline:
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    2161
    2221
    2281
    2341
    2401
    2461
    2521
    2581
    2641
    2701
    2761
    2821
    2881
    2941
    3001
    3061
    3121
    3181
    3241
    3301
    3361
    3421
    3481
    3541
    ATGAGTTTAAGAAATAAAATTGAGCAACATATTAAAGAGCTAGAGGGAGGGAAGTTTCAA
    AAACTAGGTGACGCGTACCTAAGTAGAAAATACAATTTTAATATTGTTTCATTAGGCTCA
    CAGGAAGGAACAGATAAAACAACTAAAGGGATCCCAGATTCTTACGCTGTCGAAAATGGT
    AAATATGTTTATATTATGTATGGCACCCATAAGTCTGTAATATCTAAATTAGAAGGAGAC
    ATTCAGTCAGTTAAGAAAAAAATTTTAGAGGAAAATATTGCTGAAGATAAAGTTGGGAGA
    CTTATTTGTTGTCATACTTCTTCAAATATAACAATTAAACAAAAAGAAGATCTAGAAAAA
    ATGGCTGAGCCTTATCATCTAGAATTGATTGGAATTAATGAAATTGCTAATGATCTTACA
    AAGATAGATTTTCAATATTTAGCAAAAGAGTATCTATCAATCAGTGAATCTACAGAGCAA
    GTTTGGTCTATCAATGACTTCATAAGAATTCATGATGAGAGTAAAACTAATGCTCCTATA
    TCAAATGACTATATTGGAGATGTAAGTGAAATTATAAATACCATTAAATCAAGTGAAAAA
    CGAATCTTCTTAATATCTGCTAAGCCTGGAACAGGGAAAACTAGATTAGCAATTGAAATT
    TGCTCTTTGCTGGATCGAAATAAATATAACATTATTTGTGTCAAGAGCAATAATCAGGAT
    ATTTACCAAGATGTAAAACGCAATCTAAATTTACACAAAGAAAATATTGTTTTTATTGAT
    GATGTTAATACTACACAAAATTATATTTCTACACTTGGGCTACTGAACACGACTAGTAAT
    ATTCGGTTTATTCTTACGGTACGTGATTATGCTAAAAAAGATGTAATCAATAATATTAAA
    GTTTATGGGTACAATAATATTGAGCCAGAACTTATAAAAGATGATAATTTTAAGGAATTA
    CTCAATCAATTTTCTCGAAACGATTTTACCAATCAAGAAATTGAACATATAAAAACGATA
    TCTAAAAGCAATCCGCGTATTGCAGTCATTGCAGCAAAGTTATCTAGCTCTCAGGATTTG
    ACTAATTTTAATGATGAGATTGATATTTTAAAAGATTACTATGAAGAAATTTTAAATAAA
    AACAACATTATTTATGCAGAACAAAAGACTCTATTTATTTTATCTTACTTAAAAAAGATT
    AGACTGGAAAGTTTAGAAGAGAACCAGGAATTCAATAAATTACTAAAAATAACTGACATA
    ACAAATACTGACTTTAAGAGTGCAGTGGAGAAGCTTCATGAAAGAGAGTTGTGTAATATT
    TATAACGACAAAATTGTAAAGATAGCAGATCAATCATTAGATGATTATATAGTTATCAAG
    TTTTTAATTAACAAGAAAATATCAATTTTAGAAATTTTACATGAGTTATATCCAGTAAAC
    GACCAAAGAGTTGTTCAAATACTAAATCAATGTTCCAATTTTATTAGGAAAGAGAGTGAT
    TTAGAAGGCGTTTCTGATGCAGTTAAATCATATTATTACAATGAAAGTAATTTTGAAAGT
    GATGAACTTAAAGAAAAGTTTTTAATACAATTTGGAGTATTACTTCCTTTAGAAGCAATT
    TCACACGTTAAAAATAAAATTGATAATATAGAGTCTCAGGTTTATACAAAGACTAATTTT
    ATTAATCAGAAGGATAAAAAGGGATCTATTGAGGATTCAGTTTTAAATATTGTATTTGTA
    ACTACACGGACAAAATATTGTAGTCAAATTCTCCAATTATTGTTAAAGTACTTTGATAAA
    AATCCTAATAAAATTTCTGAGGTTTATAGTATTCTTGAAGCAAACTACGGGTTGGTTACA
    GAAAGAGAATATATTGATTATACCTTAGCTGAAAATACCATTTCTGAACTTGCTAATCTT
    GATTTGACGAAAAGTTATAACCAAGAATTAATCGTGACAATTTTGAAGCAGTTTCTTAAA
    ATTGAAATCGAAAGAACAGAGGCTCATGAAGAGAAATTTACTTTTGGGCGCTATAAAGTC
    CCGGATAGTGAAAAATTAAAACAGTATCATAGAAGTATACTAAAACTTTTAGCGAATTTG
    TATAATATAGGGAGTTGTGAAACTAGATTTTATATTGAGAAAATGCTATATGATTACAGA
    AGAAAAATTTTGACCTATTCAGAAAGTCATCGTAATACTATCTTTGGAGATTTGAGAAAT
    ATTAGGAAATTATTTTTTAATGACATTAAAAACTTATCTATGATTGGAGAAAAAATAGTT
    TATGCTTTGCATAAAGCCGAAGTGAAAGAAAATTTACCGATTGTTTTTGATGATTATATA
    ATTTCTGACAGACAAAAAATATATAATAATTTAACAAATCCTAACCATGCTTGGTTTTAT
    GATGCTTCTGAAATTAAACTACAACAAATTGCAAATAGCTATTCAAATGTTTGGCTTAAA
    ATTTTTAATTTTGCAAATCAATTCAAACATAGCTTATTTATGAATGACAATAACATTGAG
    CTAGTACTATTCAATATGTTTTTACTATCAAAAAATGATAAAAAGATTAAATTTCTAAAT
    TATATGTTTAAATCAAACTATCATTTTGTAAATATGAATCCGATTAGTTTTTTAGAAAAT
    ATTGAGGAAAGTTCAATGCAGTCTGTTATTGTTTCCTCTCCAGAATCAGAAAAATATGAA
    TGGCAACTTGCTTATTTAACACAACTTGAAAACGTTAAAAATGAAGATCTACAAACATTA
    AAGAGTATTCTAGAAGCTAATTCTTTACCATGTTATTTTACAATTTTAAATTTTGAGAGA
    TTGATTTTGAAAGATCCTAGTTTAAAAGAGTTGTTAATACAAAAAGCTGGGAATACAAAT
    TTTGTTATTTCTGATTTTATAAGAGAAGAAGAGGTGCCAAAATTAATAAATCTAATTGGA
    GTAAAAGAGTTGAAGTTTTGGTATTTAATAAATTTAGAAAATTGTCAGAATCACAGCTAT
    AATCTTTTTCAAAAATTAGGTGAAAAAGATGTTGATTTTTCGGTAGAAGTATTGAAGAAA
    ATTGATGAATTGAGAATAGGTCATTCCAATTTAGGATACATGGTATTACATTCTATAAGT
    GAATTTAGAGATAAGAAAGAAATTTATAAAAAGTTTATCCGTTTTGCAATAAATAGGCCA
    TATTACTACTACAATAATATGATTGATGATATTATAAAAAATGACAGTCAGATCATATTA
    GAAATACTGGAGGAAACAAATAATGAGCAATCTGCAATTAGATTGGTCAATCTAGGTGTA
    GAATTTTTAGAAAACAACAATCAAAAACTAATACTATTTAATCTTCTCAGAGCTAAAGGA
    TTTGGTAAGAAGTCATTCCAAGAAATACATTTTACTCCCTATTCACATTTTTATACTGGT
    AGTCATGTTCCGGTGTTGGAATTAGAAAAAGAACTCCTAGAAAGAATTAAAAAGATATTT
    GAAACGGGTATAGACTACATTAACTTGCTACTGTACTTGAATAAACTAATTGATTGCAAG
    CGAAAAGCTATTGAAAGAGAATTGGAAAAAGAGTTTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1920
    1980
    2040
    2100
    2160
    2220
    2280
    2340
    2400
    2460
    2520
    2580
    2640
    2700
    2760
    2820
    2880
    2940
    3000
    3060
    3120
    3180
    3240
    3300
    3360
    3420
    3480
    3540
    3579

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: EF3030_RS06290 [old locus tag: EF3030_06290 ]
  • symbol: EF3030_RS06290
  • description: ATP-binding protein
  • length: 1192
  • theoretical pI: 6.29603
  • theoretical MW: 139799
  • GRAVY: -0.388003

⊟Function[edit | edit source]

  • TIGRFAM:
    arsenical pump-driving ATPase (TIGR04291; EC 3.6.1.-; HMM-score: 21.8)
    Genetic information processing DNA metabolism DNA replication, recombination, and repair DnaA regulatory inactivator Hda (TIGR03420; HMM-score: 18.4)
  • TheSEED:
  • PFAM:
    P-loop_NTPase (CL0023) ResIII; Type III restriction enzyme, res subunit (PF04851; HMM-score: 20.5)
    AAA_22; AAA domain (PF13401; HMM-score: 20)
    AAA_19; AAA domain (PF13245; HMM-score: 16.7)
    and 10 more
    AAA_16; AAA ATPase domain (PF13191; HMM-score: 16)
    AAA; ATPase family associated with various cellular activities (AAA) (PF00004; HMM-score: 15.8)
    no clan defined DUF6610; Family of unknown function (DUF6610) (PF20314; HMM-score: 14.2)
    P-loop_NTPase (CL0023) AAA_7; P-loop containing dynein motor region (PF12775; HMM-score: 13.9)
    AAA_11; AAA domain (PF13086; HMM-score: 13.9)
    AAA_5; AAA domain (dynein-related subfamily) (PF07728; HMM-score: 13.6)
    MobB; Molybdopterin guanine dinucleotide synthesis protein B (PF03205; HMM-score: 13.2)
    CbiA; CobQ/CobB/MinD/ParA nucleotide binding domain (PF01656; HMM-score: 12.9)
    no clan defined Sod_Ni; Nickel-containing superoxide dismutase (PF09055; HMM-score: 12.6)
    P-loop_NTPase (CL0023) AAA_30; AAA domain (PF13604; HMM-score: 12.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.4545
    • Cytoplasmic Membrane Score: 0.3573
    • Cell wall & surface Score: 0.0038
    • Extracellular Score: 0.1844
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.031991
    • TAT(Tat/SPI): 0.007161
    • LIPO(Sec/SPII): 0.003735
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000058659 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MSLRNKIEQHIKELEGGKFQKLGDAYLSRKYNFNIVSLGSQEGTDKTTKGIPDSYAVENGKYVYIMYGTHKSVISKLEGDIQSVKKKILEENIAEDKVGRLICCHTSSNITIKQKEDLEKMAEPYHLELIGINEIANDLTKIDFQYLAKEYLSISESTEQVWSINDFIRIHDESKTNAPISNDYIGDVSEIINTIKSSEKRIFLISAKPGTGKTRLAIEICSLLDRNKYNIICVKSNNQDIYQDVKRNLNLHKENIVFIDDVNTTQNYISTLGLLNTTSNIRFILTVRDYAKKDVINNIKVYGYNNIEPELIKDDNFKELLNQFSRNDFTNQEIEHIKTISKSNPRIAVIAAKLSSSQDLTNFNDEIDILKDYYEEILNKNNIIYAEQKTLFILSYLKKIRLESLEENQEFNKLLKITDITNTDFKSAVEKLHERELCNIYNDKIVKIADQSLDDYIVIKFLINKKISILEILHELYPVNDQRVVQILNQCSNFIRKESDLEGVSDAVKSYYYNESNFESDELKEKFLIQFGVLLPLEAISHVKNKIDNIESQVYTKTNFINQKDKKGSIEDSVLNIVFVTTRTKYCSQILQLLLKYFDKNPNKISEVYSILEANYGLVTEREYIDYTLAENTISELANLDLTKSYNQELIVTILKQFLKIEIERTEAHEEKFTFGRYKVPDSEKLKQYHRSILKLLANLYNIGSCETRFYIEKMLYDYRRKILTYSESHRNTIFGDLRNIRKLFFNDIKNLSMIGEKIVYALHKAEVKENLPIVFDDYIISDRQKIYNNLTNPNHAWFYDASEIKLQQIANSYSNVWLKIFNFANQFKHSLFMNDNNIELVLFNMFLLSKNDKKIKFLNYMFKSNYHFVNMNPISFLENIEESSMQSVIVSSPESEKYEWQLAYLTQLENVKNEDLQTLKSILEANSLPCYFTILNFERLILKDPSLKELLIQKAGNTNFVISDFIREEEVPKLINLIGVKELKFWYLINLENCQNHSYNLFQKLGEKDVDFSVEVLKKIDELRIGHSNLGYMVLHSISEFRDKKEIYKKFIRFAINRPYYYYNNMIDDIIKNDSQIILEILEETNNEQSAIRLVNLGVEFLENNNQKLILFNLLRAKGFGKKSFQEIHFTPYSHFYTGSHVPVLELEKELLERIKKIFETGIDYINLLLYLNKLIDCKRKAIERELEKEF

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=EF3030_RS06290&oldid=14555"