From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 30-NOV-2024

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae EF3030
  • locus tag: EF3030_RS06725 [old locus tag: EF3030_06725 ]
  • pan locus tag?: PNEUPAN002715000
  • symbol: EF3030_RS06725
  • pan gene symbol?: ABC-NBD_15
  • synonym:
  • product: ABC transporter ATP-binding protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: EF3030_RS06725 [old locus tag: EF3030_06725 ]
  • symbol: EF3030_RS06725
  • product: ABC transporter ATP-binding protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1292869..1294233
  • length: 1365
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NZ_CP035897 (1292869..1294233) NCBI
  • BioCyc: EF3030_RS06725 BioCyc
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_1267 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    ATGGTTGAAATAAAAAGTTTAAGTCTTGATTATGGTGAAGAGCATATATTAGATGATATA
    TCACTATCCATAGCCGAGGGAGAGTGCGTGCTATTTACAGGAAAAAGTGGAAATGGTAAG
    TCATCTTTAATAAATTCAATCAATGGACTAGCTGTAAGGTATGACAACGCAAAGACAAAG
    GGCGAAATCATTATTGATGGTAAGAATATAAAAAATTTGGAACTTTATCAAATCTCAATG
    CTTGTTTCAACTGTTTTTCAAAATCCTAAGACATATTTTTTTAATGTCAATACGACATTA
    GAATTATTATTTTATTTGGAAAATATCGGTCTTGCAAGAGAAGAGATGGACAGGCGTTTG
    AAGGATATGCTTAAGATATTCCCGATAAAAAATCTTTTGAACAGAAATATATTTAATCTA
    TCCGGCGGTGAAAAACAAATTCTTTGCATTGCAGCCTCTTATATAGCAGGTACAAAGATT
    ATAGTTATGGATGAGCCTTCATCGAATTTAGATATTAAAAGCATAAGTGTTTTGGCAAAG
    ATGCTAAAGATATTAAAAGAGAAAGGTATAAGCATAATTGTTGCAGAGCATAGAATTTAT
    TATTTGATGGACATAGTTGACCGTGTATTTTTAATAGATAAAGGAAAGCTTAAAAAAACT
    TATACTAGAAGTGAATTTTTAAAGCTAGATAAAAATGAATTAAATGCTTTAAGTTTAAGA
    GATAAAGAATTAAGTAAATTAAAAGTTCCTTATTTAAAAGAAGGTGGAGAGTATCAGATA
    AAAAATCTTAGCTACAAATTTACTGATGATGAGTGTTTAAGCTTAAAAGATATTTCATTC
    AAGCTTGGGAAAATTTATGGCATAATAGGATCCAACGGACGAGGAAAATCAACGCTTTTA
    AGATGTTTAATAGGTCTTGAGAAAAAATCAAAAGAAGAAATTTATTTTAAGGGAGAGAAG
    CTATCTAAAAAAGAAAGACTCAAAAACTCTTCACTTGTTATGCAAGATGTAAATCATCAA
    TTATTCACAGATGAAGTATTCAACGAGCTTAGATTAGGAGTAAAGAATTTTGATGAAGAA
    AAGGCGAAAATCATTTTAAAAGATTTAGGCCTGGACGAATTTATTGAAAGGCATCCGATG
    AGTTTATCAGGAGGGCAAAAGCAAAGGCTTGCAATAGCATCTGTTATGTGCAAGACTTCT
    CCATTTGTCTTTTTTGACGAACCTTCAAGTGGTATGGATTATTCCAATATGATAAAAATA
    TCTGAACTGATTAATAAGTATAAAACCATGGATAAAATAATTTTTATTGTTTCCCATGAT
    ATAGAATTTTTAAATGAAGTGGCAGATGAAATTTTTGAATTGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1365

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: EF3030_RS06725 [old locus tag: EF3030_06725 ]
  • symbol: EF3030_RS06725
  • description: ABC transporter ATP-binding protein
  • length: 454
  • theoretical pI: 8.15371
  • theoretical MW: 51761
  • GRAVY: -0.15815

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Unknown substrate energy-coupling factor transporter ATPase (TIGR04521; EC 3.6.3.-; HMM-score: 260.2)
    Metabolism Transport and binding proteins Unknown substrate energy-coupling factor transporter ATPase (TIGR04520; EC 3.6.3.-; HMM-score: 245.1)
    Metabolism Transport and binding proteins Cations and iron carrying compounds cobalt ABC transporter, ATP-binding protein (TIGR01166; HMM-score: 208.3)
    and 77 more
    Metabolism Transport and binding proteins Anions phosphate ABC transporter, ATP-binding protein (TIGR00972; EC 3.6.3.27; HMM-score: 199.6)
    Cellular processes Cellular processes Toxin production and resistance putative bacteriocin export ABC transporter, lactococcin 972 group (TIGR03608; HMM-score: 198)
    Metabolism Transport and binding proteins Unknown substrate putative bacteriocin export ABC transporter, lactococcin 972 group (TIGR03608; HMM-score: 198)
    Metabolism Transport and binding proteins Amino acids, peptides and amines urea ABC transporter, ATP-binding protein UrtE (TIGR03410; HMM-score: 185.8)
    Cellular processes Cellular processes Cell division cell division ATP-binding protein FtsE (TIGR02673; HMM-score: 179.8)
    Cellular processes Cellular processes Pathogenesis type I secretion system ATPase (TIGR03375; HMM-score: 178.6)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking type I secretion system ATPase (TIGR03375; HMM-score: 178.6)
    Metabolism Transport and binding proteins Anions phosphonate ABC transporter, ATP-binding protein (TIGR02315; EC 3.6.3.28; HMM-score: 178.1)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking lipoprotein releasing system, ATP-binding protein (TIGR02211; EC 3.6.3.-; HMM-score: 177.5)
    Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides LPS export ABC transporter ATP-binding protein (TIGR04406; HMM-score: 171)
    Metabolism Transport and binding proteins Other LPS export ABC transporter ATP-binding protein (TIGR04406; HMM-score: 171)
    Metabolism Transport and binding proteins Cations and iron carrying compounds nickel import ATP-binding protein NikE (TIGR02769; EC 3.6.3.24; HMM-score: 170.7)
    lantibiotic protection ABC transporter, ATP-binding subunit (TIGR03740; HMM-score: 170.1)
    Metabolism Transport and binding proteins Cations and iron carrying compounds nickel import ATP-binding protein NikD (TIGR02770; HMM-score: 169.9)
    thiol reductant ABC exporter, CydD subunit (TIGR02857; HMM-score: 166.6)
    Metabolism Transport and binding proteins Anions sulfate ABC transporter, ATP-binding protein (TIGR00968; EC 3.6.3.25; HMM-score: 164.3)
    Metabolism Transport and binding proteins Amino acids, peptides and amines putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TIGR03265; HMM-score: 163.1)
    Metabolism Transport and binding proteins Other daunorubicin resistance ABC transporter, ATP-binding protein (TIGR01188; HMM-score: 161.2)
    Metabolism Transport and binding proteins Anions molybdate ABC transporter, ATP-binding protein (TIGR02142; EC 3.6.3.29; HMM-score: 155.2)
    Cellular processes Cellular processes Biosynthesis of natural products NHLM bacteriocin system ABC transporter, ATP-binding protein (TIGR03797; HMM-score: 155.1)
    Metabolism Transport and binding proteins Amino acids, peptides and amines NHLM bacteriocin system ABC transporter, ATP-binding protein (TIGR03797; HMM-score: 155.1)
    ABC exporter ATP-binding subunit, DevA family (TIGR02982; HMM-score: 154.2)
    Metabolism Transport and binding proteins Amino acids, peptides and amines urea ABC transporter, ATP-binding protein UrtD (TIGR03411; HMM-score: 152.9)
    Metabolism Transport and binding proteins Other thiamine ABC transporter, ATP-binding protein (TIGR01277; EC 3.6.3.-; HMM-score: 152.8)
    Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides lipid A export permease/ATP-binding protein MsbA (TIGR02203; HMM-score: 151.9)
    Metabolism Transport and binding proteins Other lipid A export permease/ATP-binding protein MsbA (TIGR02203; HMM-score: 151.9)
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system (TIGR03864; HMM-score: 151.6)
    D-methionine ABC transporter, ATP-binding protein (TIGR02314; EC 3.6.3.-; HMM-score: 149.7)
    Metabolism Transport and binding proteins Amino acids, peptides and amines glycine betaine/L-proline transport ATP binding subunit (TIGR01186; HMM-score: 147.4)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking type I secretion system ATPase (TIGR01842; HMM-score: 142.5)
    thiol reductant ABC exporter, CydC subunit (TIGR02868; HMM-score: 141.9)
    Metabolism Transport and binding proteins Amino acids, peptides and amines polyamine ABC transporter, ATP-binding protein (TIGR01187; EC 3.6.3.31; HMM-score: 139.7)
    ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA (TIGR03005; HMM-score: 139.3)
    proposed F420-0 ABC transporter, ATP-binding protein (TIGR03873; HMM-score: 136.4)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking heme ABC exporter, ATP-binding protein CcmA (TIGR01189; EC 3.6.3.41; HMM-score: 133.3)
    Metabolism Transport and binding proteins Other heme ABC exporter, ATP-binding protein CcmA (TIGR01189; EC 3.6.3.41; HMM-score: 133.3)
    Cellular processes Cellular processes Biosynthesis of natural products NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein (TIGR03796; HMM-score: 132)
    Metabolism Transport and binding proteins Amino acids, peptides and amines NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein (TIGR03796; HMM-score: 132)
    Metabolism Energy metabolism Methanogenesis methyl coenzyme M reductase system, component A2 (TIGR03269; HMM-score: 128.9)
    ABC transporter, permease/ATP-binding protein (TIGR02204; HMM-score: 128)
    Metabolism Transport and binding proteins Other pigment precursor permease (TIGR00955; HMM-score: 127.5)
    Metabolism Transport and binding proteins Amino acids, peptides and amines choline ABC transporter, ATP-binding protein (TIGR03415; HMM-score: 126.5)
    2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT (TIGR03258; HMM-score: 125.5)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking type I secretion system ATPase (TIGR01846; HMM-score: 123.8)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Other FeS assembly ATPase SufC (TIGR01978; HMM-score: 123.8)
    Metabolism Transport and binding proteins Anions nitrate ABC transporter, ATP-binding proteins C and D (TIGR01184; HMM-score: 121)
    Metabolism Transport and binding proteins Other nitrate ABC transporter, ATP-binding proteins C and D (TIGR01184; HMM-score: 121)
    phosphonate C-P lyase system protein PhnL (TIGR02324; HMM-score: 120.3)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking ABC-type bacteriocin transporter (TIGR01193; HMM-score: 117.5)
    Genetic information processing Protein fate Protein modification and repair ABC-type bacteriocin transporter (TIGR01193; HMM-score: 117.5)
    Metabolism Transport and binding proteins Other ABC-type bacteriocin transporter (TIGR01193; HMM-score: 117.5)
    Metabolism Transport and binding proteins Unknown substrate anchored repeat-type ABC transporter, ATP-binding subunit (TIGR03771; HMM-score: 115.2)
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids D-xylose ABC transporter, ATP-binding protein (TIGR02633; EC 3.6.3.17; HMM-score: 113.5)
    Cellular processes Cellular processes Other nodulation ABC transporter NodI (TIGR01288; HMM-score: 109.9)
    Metabolism Transport and binding proteins Other nodulation ABC transporter NodI (TIGR01288; HMM-score: 109.9)
    ATP-binding cassette protein, ChvD family (TIGR03719; HMM-score: 109.3)
    gliding motility-associated ABC transporter ATP-binding subunit GldA (TIGR03522; HMM-score: 105.9)
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids glucan exporter ATP-binding protein (TIGR01192; EC 3.6.3.42; HMM-score: 100.2)
    Metabolism Transport and binding proteins Other multi drug resistance-associated protein (MRP) (TIGR00957; HMM-score: 97)
    Metabolism Transport and binding proteins Other antigen peptide transporter 2 (TIGR00958; HMM-score: 96.9)
    Metabolism Transport and binding proteins Anions cystic fibrosis transmembrane conductor regulator (CFTR) (TIGR01271; EC 3.6.3.49; HMM-score: 95.8)
    Metabolism Transport and binding proteins Other rim ABC transporter (TIGR01257; HMM-score: 85.2)
    Metabolism Transport and binding proteins Amino acids, peptides and amines cyclic peptide transporter (TIGR01194; HMM-score: 85)
    Metabolism Transport and binding proteins Other cyclic peptide transporter (TIGR01194; HMM-score: 85)
    Genetic information processing DNA metabolism DNA replication, recombination, and repair excinuclease ABC subunit A (TIGR00630; EC 3.1.25.-; HMM-score: 81.7)
    Metabolism Central intermediary metabolism Phosphorus compounds phosphonate C-P lyase system protein PhnK (TIGR02323; HMM-score: 74.7)
    Metabolism Transport and binding proteins Other pleiotropic drug resistance family protein (TIGR00956; HMM-score: 52.3)
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids peroxysomal long chain fatty acyl transporter (TIGR00954; HMM-score: 46)
    Genetic information processing Protein synthesis Translation factors ribosome small subunit-dependent GTPase A (TIGR00157; EC 3.6.-.-; HMM-score: 21.5)
    Genetic information processing DNA metabolism DNA replication, recombination, and repair DNA repair protein RadA (TIGR00416; HMM-score: 18.1)
    Metabolism Energy metabolism Amino acids and amines ethanolamine utilization protein, EutP (TIGR02528; HMM-score: 15.8)
    Unknown function General small GTP-binding protein domain (TIGR00231; HMM-score: 13.6)
    Cellular processes Cellular processes Cell division chromosome segregation protein SMC (TIGR02168; HMM-score: 13.6)
    Genetic information processing DNA metabolism Chromosome-associated proteins chromosome segregation protein SMC (TIGR02168; HMM-score: 13.6)
    Genetic information processing Protein synthesis Other ribosome biogenesis GTP-binding protein YsxC (TIGR03598; HMM-score: 12.2)
    Metabolism Transport and binding proteins Amino acids, peptides and amines LAO/AO transport system ATPase (TIGR00750; EC 2.7.-.-; HMM-score: 12.1)
    Signal transduction Regulatory functions Protein interactions LAO/AO transport system ATPase (TIGR00750; EC 2.7.-.-; HMM-score: 12.1)
  • TheSEED: data available for D39, TIGR4
  • PFAM:
    P-loop_NTPase (CL0023) ABC_tran; ABC transporter (PF00005; HMM-score: 176.7)
    and 24 more
    AAA_21; AAA domain, putative AbiEii toxin, Type IV TA system (PF13304; HMM-score: 63.3)
    SMC_N; RecF/RecN/SMC N terminal domain (PF02463; HMM-score: 57.2)
    RsgA_GTPase; RsgA GTPase (PF03193; HMM-score: 34.5)
    AAA_29; P-loop containing region of AAA domain (PF13555; HMM-score: 31.5)
    AAA_16; AAA ATPase domain (PF13191; HMM-score: 24.6)
    MMR_HSR1; 50S ribosome-binding GTPase (PF01926; HMM-score: 24)
    SbcC_Walker_B; SbcC/RAD50-like, Walker B motif (PF13558; HMM-score: 20.1)
    RNA_helicase; RNA helicase (PF00910; HMM-score: 19.4)
    AAA_13; AAA domain (PF13166; HMM-score: 18.6)
    Dynamin_N; Dynamin family (PF00350; HMM-score: 17.4)
    Septin; Septin (PF00735; HMM-score: 15.9)
    NACHT; NACHT domain (PF05729; HMM-score: 15.8)
    AAA_22; AAA domain (PF13401; HMM-score: 15.5)
    Roc; Ras of Complex, Roc, domain of DAPkinase (PF08477; HMM-score: 15.2)
    AAA_14; AAA domain (PF13173; HMM-score: 15)
    PduV-EutP; Ethanolamine utilisation - propanediol utilisation (PF10662; HMM-score: 14.9)
    FtsK_SpoIIIE; FtsK/SpoIIIE family (PF01580; HMM-score: 14.6)
    ACT (CL0070) ACT_7; ACT domain (PF13840; HMM-score: 13.5)
    P-loop_NTPase (CL0023) Mg_chelatase; Magnesium chelatase, subunit ChlI (PF01078; HMM-score: 13.3)
    DUF815; Protein of unknown function (DUF815) (PF05673; HMM-score: 13.2)
    AAA_7; P-loop containing dynein motor region (PF12775; HMM-score: 13.2)
    ABC_ATPase; ATPase of the ABC class (PF09818; HMM-score: 13)
    AAA_23; AAA domain (PF13476; HMM-score: 12.7)
    AAA_19; AAA domain (PF13245; HMM-score: 12.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 1.05
    • Cytoplasmic Membrane Score: 8.78
    • Cellwall Score: 0.08
    • Extracellular Score: 0.09
    • Internal Helices: 0
  • DeepLocPro: Extracellular
    • Cytoplasmic Score: 0.383
    • Cytoplasmic Membrane Score: 0.0452
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.5718
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.011637
    • TAT(Tat/SPI): 0.000509
    • LIPO(Sec/SPII): 0.001273
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000229371 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MVEIKSLSLDYGEEHILDDISLSIAEGECVLFTGKSGNGKSSLINSINGLAVRYDNAKTKGEIIIDGKNIKNLELYQISMLVSTVFQNPKTYFFNVNTTLELLFYLENIGLAREEMDRRLKDMLKIFPIKNLLNRNIFNLSGGEKQILCIAASYIAGTKIIVMDEPSSNLDIKSISVLAKMLKILKEKGISIIVAEHRIYYLMDIVDRVFLIDKGKLKKTYTRSEFLKLDKNELNALSLRDKELSKLKVPYLKEGGEYQIKNLSYKFTDDECLSLKDISFKLGKIYGIIGSNGRGKSTLLRCLIGLEKKSKEEIYFKGEKLSKKERLKNSSLVMQDVNHQLFTDEVFNELRLGVKNFDEEKAKIILKDLGLDEFIERHPMSLSGGQKQRLAIASVMCKTSPFVFFDEPSSGMDYSNMIKISELINKYKTMDKIIFIVSHDIEFLNEVADEIFEL

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=EF3030_RS06725&oldid=14640"