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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 30-NOV-2024

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae EF3030
  • locus tag: EF3030_RS08235 [old locus tag: EF3030_08235 ]
  • pan locus tag?: PNEUPAN000306000
  • symbol: EF3030_RS08235
  • pan gene symbol?: —
  • synonym:
  • product: NACHT domain-containing protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: EF3030_RS08235 [old locus tag: EF3030_08235 ]
  • symbol: EF3030_RS08235
  • product: NACHT domain-containing protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1574407..1576218
  • length: 1812
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NZ_CP035897 (1574407..1576218) NCBI
  • BioCyc: EF3030_RS08235 BioCyc
  • MicrobesOnline:
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    ATGAATATACCAATACCATTTGGTGATATTCTTGAAAAAGAAGTAATTACCAATATACCT
    AAAATTTATCAAAAGTTAAAGCAAATTTATAACGACTTACAGTTTAAAACAGAAGAAGAG
    TTAGGTGTTGTTTATCAAGAATATTTACAATTTACTTATAAAAAATATTCCACTGTAAAA
    ACATTGTTGTATAAAAATGAAGGGAAATTTTTATATGATTTCTATGAGCATGTTTATTTA
    GATGATAATAATTCAGATTTAATAGAAACCTCTAACACAGAATTGATTTTTGAAAAAACA
    TCTAACGTTATTTTGACAGGAACGGGTGGGATTGGTAAATCAATGCTTGTAAAGCATATT
    TTTATCAATCAAGTACAACAAGCTACATCAATTCCAATTTTTATTGAATTAAAATCACTT
    AATGAATCTGATTTCTCAGAAAATGAATTAGTTGATTTTATTTACCAAGAGGTTCAAAAT
    CATCATTTAAATTTAGAAAAGAAATATTTTAAAGCGACATTAGAGGCTGGAAGATATACA
    ATAATTTTTGATGGTTTAGATGAGGTTAATCCTTCAAAACGTTCTTGGTTGGACAAAGAA
    ATTAAAGAATTTGTAACGTTATACAATAGCAATAGATATGTTTTGTCGTCAAGACCGTCT
    GAGGAATTTATTGGTTGGAATCAGTTTGCTGAGTATGAGATAAAAAAATTAAATAGAGAG
    CAAGCGTTATCCTTAATTGATAAGTTGAATTATGATGAGAAAGTAAAAAGGCGTTTCTAC
    AGAGAATTAAAGGATCATTTATATGATACTCATGAATCTTTTGCTTCTATCCCACTCCTA
    TTAACAATTATGTTAATGACTTACGAAGCTGGTGCTTCTATTCCAAATAATTTAACTGAT
    TTTTATAATCAGGCCTTTTATACATTGTACCAAAGACATGATGCATCTAAATCAGGATAC
    AAAAGAGAACTAAAAGCAAAATTAACTCCTGAAGAATTTCGAAATATATTAGCCTACATT
    GGTTTAAAAACATTCTTTGAAGGAAAAGTAGATTTCGATAGAACTACACTTGATGAAATA
    ATTACTAAATATTGTTTTAAAAATAACCTTGAATTAAAGACGAATGATATAGTTTATGAT
    GCGACTCATAGTGCTTGTATGATGCTTCAAGAAGGCGTTAGTTTAAAATTCTCTCACCGT
    TCATTCCAAGAATACTTTGCTGCAGTAGGTGTTAATCAGCTAGATGATAAACTCCAAAAA
    CAGATACTAATTAAGTGGTCTGAAGCAGATAGGAATAATATTGTAGCACATAAAACTTTT
    ATGAATGCACTTTTTAAAATACAGAAAGAAAGGACTTACAAAAATTTATGTATTCCAATC
    ATAGAAAGAATGGATGAAAAGTATAGCAGAATGGGGGATATCACAGAGAAAATTGTTACG
    TGTTTCAATTACTTTATCTGTAGAAAAGATAGTAGAGAAAACAAATTAGAATTGCACTTT
    TTACTAACAAAGGAAGTTCACTTTTATTTTAGCTTGCAATTTTTAATATTTGCTAATCTA
    GGTATTGATATATTATCAATAAGTGATTATGAAAATATAGAAAAATTAGAGTCTGATATA
    GTATCAAATTGGAAGATAAATGAAAGAAAATATTATAACATGTTGAACGATGATGAAAAA
    ACTTTAATAAATAAGTGGATAAATGGCTGGTATTTTAGTAGACACAATTACTTAAAAGAA
    TGGTCAATTAAATTCATTGAGGAAACAACTACTCAAAAACGGAGCCTACAGAATATAATT
    GACTCAATTTGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1812

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: EF3030_RS08235 [old locus tag: EF3030_08235 ]
  • symbol: EF3030_RS08235
  • description: NACHT domain-containing protein
  • length: 603
  • theoretical pI: 6.10272
  • theoretical MW: 71671.2
  • GRAVY: -0.458541

⊟Function[edit | edit source]

  • TIGRFAM:
    phosphonate C-P lyase system protein PhnL (TIGR02324; HMM-score: 13.3)
  • TheSEED:
  • PFAM:
    P-loop_NTPase (CL0023) NACHT; NACHT domain (PF05729; HMM-score: 37.9)
    and 11 more
    AAA_14; AAA domain (PF13173; HMM-score: 22.9)
    AAA_7; P-loop containing dynein motor region (PF12775; HMM-score: 20.7)
    NB-ARC; NB-ARC domain (PF00931; HMM-score: 18.6)
    DUF815; Protein of unknown function (DUF815) (PF05673; HMM-score: 17.3)
    AAA_16; AAA ATPase domain (PF13191; HMM-score: 16.6)
    no clan defined NLRC4_HD2; NLRC4 helical domain HD2 (PF17776; HMM-score: 15.8)
    P-loop_NTPase (CL0023) AAA_22; AAA domain (PF13401; HMM-score: 15.6)
    ABC_tran; ABC transporter (PF00005; HMM-score: 15.3)
    AAA; ATPase family associated with various cellular activities (AAA) (PF00004; HMM-score: 13.5)
    AAA_24; AAA domain (PF13479; HMM-score: 13.4)
    RNase_H (CL0219) rve_2; Integrase core domain (PF13333; HMM-score: 8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.1544
    • Cytoplasmic Membrane Score: 0.6162
    • Cell wall & surface Score: 0.0013
    • Extracellular Score: 0.2282
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002088
    • TAT(Tat/SPI): 0.000093
    • LIPO(Sec/SPII): 0.000327
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_001025033 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MNIPIPFGDILEKEVITNIPKIYQKLKQIYNDLQFKTEEELGVVYQEYLQFTYKKYSTVKTLLYKNEGKFLYDFYEHVYLDDNNSDLIETSNTELIFEKTSNVILTGTGGIGKSMLVKHIFINQVQQATSIPIFIELKSLNESDFSENELVDFIYQEVQNHHLNLEKKYFKATLEAGRYTIIFDGLDEVNPSKRSWLDKEIKEFVTLYNSNRYVLSSRPSEEFIGWNQFAEYEIKKLNREQALSLIDKLNYDEKVKRRFYRELKDHLYDTHESFASIPLLLTIMLMTYEAGASIPNNLTDFYNQAFYTLYQRHDASKSGYKRELKAKLTPEEFRNILAYIGLKTFFEGKVDFDRTTLDEIITKYCFKNNLELKTNDIVYDATHSACMMLQEGVSLKFSHRSFQEYFAAVGVNQLDDKLQKQILIKWSEADRNNIVAHKTFMNALFKIQKERTYKNLCIPIIERMDEKYSRMGDITEKIVTCFNYFICRKDSRENKLELHFLLTKEVHFYFSLQFLIFANLGIDILSISDYENIEKLESDIVSNWKINERKYYNMLNDDEKTLINKWINGWYFSRHNYLKEWSIKFIEETTTQKRSLQNIIDSI

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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