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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 30-NOV-2024
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae EF3030
- locus tag: EF3030_RS12235 [old locus tag: EF3030_08430 ]
- pan locus tag?: PNEUPAN003246000
- symbol: EF3030_RS12235
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: EF3030_RS12235 [old locus tag: EF3030_08430 ]
- symbol: EF3030_RS12235
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 1624215..1624316
- length: 102
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NZ_CP035897 (1624215..1624316) NCBI
- BioCyc:
- MicrobesOnline:
- PneumoBrowse for strain D39V:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61ATCAAAGAGGGGCACAGACATGTCGAGGCGGCCAAAGTTTTTGATGTCGGCGTCAGAACT
CTCTTCACGTGGGAAAAGAAAGACGTGAACAAGGGAACTTAG60
102
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: EF3030_RS12235 [old locus tag: EF3030_08430 ]
- symbol: EF3030_RS12235
- description: hypothetical protein
- length: 33
- theoretical pI: 10.2057
- theoretical MW: 3814.35
- GRAVY: -0.733333
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED:
- PFAM: HTH (CL0123) HTH_Tnp_IS630; Transposase (PF01710; HMM-score: 17)HTH_29; Winged helix-turn helix (PF13551; HMM-score: 15.9)MerR; MerR family regulatory protein (PF00376; HMM-score: 13.8)and 1 moreHTH_23; Homeodomain-like domain (PF13384; HMM-score: 13.6)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Extracellular
- Cytoplasmic Score: 0.24
- Cytoplasmic Membrane Score: 0.05
- Cellwall Score: 0.8
- Extracellular Score: 8.91
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.9402
- Cytoplasmic Membrane Score: 0.0005
- Cell wall & surface Score: 0.0004
- Extracellular Score: 0.0589
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.128049
- TAT(Tat/SPI): 0.013038
- LIPO(Sec/SPII): 0.046547
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_129558632 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MKEGHRHVEAAKVFDVGVRTLFTWEKKDVNKGT
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription[edit | edit source]
- transcription start site:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V:
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]