From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 14-DEC-2020

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae ATCC 49619
  • locus tag: EL263_RS07925 [old locus tag: SPAT_1512 ]
  • pan locus tag?: PNEUPAN003030000
  • symbol: EL263_RS07925
  • pan gene symbol?: —
  • synonym:
  • product: nicotinamide mononucleotide transporter family protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: EL263_RS07925 [old locus tag: SPAT_1512 ]
  • symbol: EL263_RS07925
  • product: nicotinamide mononucleotide transporter family protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1495021..1495728
  • length: 708
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NZ_AP018938 (1495021..1495728) NCBI
  • BioCyc: EL263_RS07925 BioCyc
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_2367 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    ATGAAAAAATCACTAAAAATTTTTGCTACATCTAAATGGTTTGACCTCTTCGGGGTTGCT
    TTGGTCGTTGGGATTGCGATTGCATCTGGTTATCTCAACTCACGCCTCGATAAATTTGTA
    GACTGGGGACTATGGACAGCTCTTGTACCCTTTGGATTGATTTCCGTAACCAACGTTGGG
    ATTTCCATGTTGTCCACTCGTTTCACGGGGAAATTAAGCAAATGGGGAAATTACTTTGGT
    ATTGTTAATACCATTTTGTCCGGTGCTATTGATTATATCCTTGGAAATAAGGCGGCCATC
    ATTACCTATCCCGTCACCTTCCTCATTTATACCTTTGCTATAAAGAAATGGAAAGCTTCG
    CAAGAAGGCAGACCCAACCAAATAAGCCAAAAACAGGTAAAATTGGCGGTCATCATCATT
    TCCATCATCGCCTTCCTCTTTGCCTTTGTGACCAACTATATCGGATATGAGGGCAAGATG
    AATCTCCTTGCCTACGTAACAACTATTGCCTTTGCACTATCCCTCATTGCCAATGCTTTG
    AATGCATTAAAACTAACAACTCAGTGGGGCTTTTGGTTGATTTACAATTTCGTTCAGCTG
    ACAAAAGCTGGTATTCAAGGAAACTTCGCCAATATCGGTAAATACATCTTTTATATCCTC
    AATGCAATCGGAGCTTTATTTGTCTGGAATGATGAAGAAGTTAGATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    708

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: EL263_RS07925 [old locus tag: SPAT_1512 ]
  • symbol: EL263_RS07925
  • description: nicotinamide mononucleotide transporter family protein
  • length: 235
  • theoretical pI: 10.3125
  • theoretical MW: 26204.7
  • GRAVY: 0.60383

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Pyridine nucleotides nicotinamide mononucleotide transporter PnuC (TIGR01528; HMM-score: 31.6)
    Metabolism Transport and binding proteins Other nicotinamide mononucleotide transporter PnuC (TIGR01528; HMM-score: 31.6)
  • TheSEED: data available for TIGR4
  • PFAM:
    no clan defined NMN_transporter; Nicotinamide mononucleotide transporter (PF04973; HMM-score: 61.5)
    and 3 more
    SLATT (CL0676) DUF4231; Protein of unknown function (DUF4231) (PF14015; HMM-score: 11.5)
    no clan defined MerC; MerC mercury resistance protein (PF03203; HMM-score: 9.4)
    DUF373; Domain of unknown function (DUF373) (PF04123; HMM-score: 6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 6
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.05419
    • TAT(Tat/SPI): 0.000704
    • LIPO(Sec/SPII): 0.052377
  • predicted transmembrane helices (TMHMM): 7

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000749107 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MKKSLKIFATSKWFDLFGVALVVGIAIASGYLNSRLDKFVDWGLWTALVPFGLISVTNVGISMLSTRFTGKLSKWGNYFGIVNTILSGAIDYILGNKAAIITYPVTFLIYTFAIKKWKASQEGRPNQISQKQVKLAVIIISIIAFLFAFVTNYIGYEGKMNLLAYVTTIAFALSLIANALNALKLTTQWGFWLIYNFVQLTKAGIQGNFANIGKYIFYILNAIGALFVWNDEEVR

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=EL263_RS07925&oldid=50437"