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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 12-FEB-2025
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae HU-OH
- locus tag: EL271_RS01925 [old locus tag: SPOH_0349 ]
- pan locus tag?: PNEUPAN001247000
- symbol: rnhC
- pan gene symbol?: rnhC
- synonym:
- product: ribonuclease HIII
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: EL271_RS01925 [old locus tag: SPOH_0349 ]
- symbol: rnhC
- product: ribonuclease HIII
- replicon: chromosome
- strand: -
- coordinates: 349337..350218
- length: 882
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NZ_AP018937 (349337..350218) NCBI
- BioCyc: EL271_RS01925 BioCyc
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_0368 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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841ATGGCAAGTATCACACTCACACCAAGCGAAAAGGATATTCAGGCTTTTCTTGAACACTAT
CAAACCAGTCTGGCTCCTAGCAAGAATCCCTATATCCGCTACTTTTTGAAACTACCTCAA
GCAACGGTTTCTATCTATACTTCTGGAAAAATCTTGCTTCAGGGTGAAGGGGCTGAAAAA
TACGCCAGTTTCTTTGGCTATCAAGCTGTAGAGCAAACCAGCGGACAAAATCTTCCTTTA
ATTGGGACAGATGAGGTGGGAAATGGTTCCTACTTTGGTGGACTTGCAGTTGTGGCTGCC
TTTGTCACACCTGACCAGCACGACTTTTTACGAAAACTCGGTGTGGGGGATTCTAAGACT
CTGACCGACCAAAAGATCCGTCAGATTGCTCCTATTCTCAAGGAAAAAATTCAGCACCAG
GCACTCCTTCTCTCACCCAGCAAGTACAACGAGGTCATCGGAGACCGCTACAATGCTGTT
TCGGTTAAGGTTGCCCTCCATAATCAGGCTATCTATCTCCTCCTTCAAAAAGGTGTTCAG
CCTGAGAAAATTGTGATTGATGCCTTTACCAGTGCTAAAAATTATGACAAGTACTTGGCA
CAAGAGGCCAATCGTTTCAGCAATCCTATCAGCTTAGAAGAAAAGGCTGAGGGCAAATAC
TTGTCTGTCGCAGTTTCTTCTGTCATTGCGCGTGATCTCTTTCTGGAAAATCTTGAAAAT
CTGGGACGAGAACTGGGTTATCAGCTTCCAAGTGGAGCTGGAACGGCTTCTGACAAGGTG
GCTAGCCAGATTTTGCAAGCCTATGGTATGCAGGGACTCAACTTCTGCGCCAAATTGCAC
TTTAAAAACACTGAAAAAGCGAAAAAACGCTTAGAAAGGTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: EL271_RS01925 [old locus tag: SPOH_0349 ]
- symbol: RnhC
- description: ribonuclease HIII
- length: 293
- theoretical pI: 9.21932
- theoretical MW: 32343.7
- GRAVY: -0.245392
⊟Function[edit | edit source]
- TIGRFAM: DNA metabolism DNA replication, recombination, and repair ribonuclease HIII (TIGR00716; EC 3.1.26.4; HMM-score: 174.5)and 1 moreDNA metabolism DNA replication, recombination, and repair ribonuclease HII (TIGR00729; EC 3.1.26.4; HMM-score: 77.8)
- TheSEED: data available for D39, Hungary19A-6, TIGR4
- PFAM: RNase_H (CL0219) RNase_HII; Ribonuclease HII (PF01351; HMM-score: 214.9)and 3 moreTBP-like (CL0407) DUF3378; Domain of unknown function (DUF3378) (PF11858; HMM-score: 68.9)TBP; Transcription factor TFIID (or TATA-binding protein, TBP) (PF00352; HMM-score: 16.5)no clan defined DUF6482; Family of unknown function (DUF6482) (PF20090; HMM-score: 12.1)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.9672
- Cytoplasmic Membrane Score: 0.0033
- Cell wall & surface Score: 0.0069
- Extracellular Score: 0.0226
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.005982
- TAT(Tat/SPI): 0.000832
- LIPO(Sec/SPII): 0.000711
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_000146855 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MASITLTPSEKDIQAFLEHYQTSLAPSKNPYIRYFLKLPQATVSIYTSGKILLQGEGAEKYASFFGYQAVEQTSGQNLPLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQHQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKYLAQEANRFSNPISLEEKAEGKYLSVAVSSVIARDLFLENLENLGRELGYQLPSGAGTASDKVASQILQAYGMQGLNFCAKLHFKNTEKAKKRLER
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0368 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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