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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 12-FEB-2025
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae HU-OH
- locus tag: EL271_RS05920 [old locus tag: SPOH_1084 ]
- pan locus tag?: PNEUPAN002394000
- symbol: EL271_RS05920
- pan gene symbol?: mutX
- synonym:
- product: NUDIX hydrolase
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: EL271_RS05920 [old locus tag: SPOH_1084 ]
- symbol: EL271_RS05920
- product: NUDIX hydrolase
- replicon: chromosome
- strand: -
- coordinates: 1102113..1102577
- length: 465
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NZ_AP018937 (1102113..1102577) NCBI
- BioCyc: EL271_RS05920 BioCyc
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_1031 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
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241
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361
421ATGCCTCAGTTAGCGACGATTTGCTACATTGATAATGGGAAAGAACTGCTCATGCTCCAT
CGTAATAAGAAACCCAATGATGTCCATGAAGGGAAATGGATTGGTGTGGGTGGTAAGCTA
GAGAGAGGAGAGACGCCCCAGGAATGCGCGGCGCGTGAAATCCTTGAAGAAACAGGGCTC
AAAGCCAAGCCAGTTCTAAAAGGTGTCATCACTTTTCCTGAATTTACAGCAGATTTAGAC
TGGTACACCTATGTTTTTAAGGTGACGGAGTTTGAGGGCGACTTGATTGACTGCAATGAG
GGGACGCTAGAATGGGTTCCCTATGACGAGGTTTTGAGCAAGCCGACTTGGGAAGGTGAC
CACACCTTTGTTGAGTGGCTTTTAGAGGATAAACCCTTCTTTTCAGCCAAGTTTGTTTAT
GATGGGGATAAATTGTTGGATACCCAAGTTGATTTCTATGAATAA60
120
180
240
300
360
420
465
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: EL271_RS05920 [old locus tag: SPOH_1084 ]
- symbol: EL271_RS05920
- description: NUDIX hydrolase
- length: 154
- theoretical pI: 4.22878
- theoretical MW: 17786
- GRAVY: -0.42013
⊟Function[edit | edit source]
- reaction: EC 3.6.1.-? ExPASy
- TIGRFAM: DNA metabolism DNA replication, recombination, and repair mutator mutT protein (TIGR00586; EC 3.6.1.-; HMM-score: 29.7)DNA metabolism DNA replication, recombination, and repair nucleoside triphosphatase YtkD (TIGR02705; EC 3.6.1.-; HMM-score: 25.8)and 1 moreUnknown function Enzymes of unknown specificity nudix-type nucleoside diphosphatase, YffH/AdpP family (TIGR00052; EC 3.6.1.-; HMM-score: 16.5)
- TheSEED: data available for D39, Hungary19A-6, TIGR4
- PFAM: NUDIX (CL0261) NUDIX; NUDIX domain (PF00293; HMM-score: 75.4)and 1 moreno clan defined DUF6630; Family of unknown function (DUF6630) (PF20335; HMM-score: 13.8)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.9587
- Cytoplasmic Membrane Score: 0.0165
- Cell wall & surface Score: 0
- Extracellular Score: 0.0248
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.00397
- TAT(Tat/SPI): 0.000164
- LIPO(Sec/SPII): 0.000986
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_001135764 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MPQLATICYIDNGKELLMLHRNKKPNDVHEGKWIGVGGKLERGETPQECAAREILEETGLKAKPVLKGVITFPEFTADLDWYTYVFKVTEFEGDLIDCNEGTLEWVPYDEVLSKPTWEGDHTFVEWLLEDKPFFSAKFVYDGDKLLDTQVDFYE
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription[edit | edit source]
- transcription start site:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1031 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]