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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 14-DEC-2020
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae NU83127
- locus tag: EL277_RS11000 [old locus tag: SPNU_2076 ]
- pan locus tag?: PNEUPAN003704000
- symbol: EL277_RS11000
- pan gene symbol?: —
- synonym:
- product: DUF3169 family protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: EL277_RS11000 [old locus tag: SPNU_2076 ]
- symbol: EL277_RS11000
- product: DUF3169 family protein
- replicon: chromosome
- strand: -
- coordinates: 2051330..2052010
- length: 681
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NZ_AP018936 (2051330..2052010) NCBI
- BioCyc: EL277_RS11000 BioCyc
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_1945 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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661TTGGGCATGTTTGTAGGGATGTTTAAGGCACGTGTCGAATCCCACGAAATTATTTTAGAT
GTAAAAGCCTTGATGCCATGGATATCAGCTATTTGTTTACTGATAGGTTTCATTAGTATG
TTTTTGACTTTCAATTTCTTAAAGAAAAGCAGAAAATTTCATTCCTTGTATCAAGAGGAA
ATGGATGACGATCTGAATGAAACCTATTATGTGCAAATGTATCGGAATCTTGAGTTTGGA
ACCATTGCTTTTAATATTACAGGTGTAGCGATTCCATTGGCTATTTTTATTTCATTAAGT
GAGGTGATTATATTGCATACAAACCCTCAAACATTTTTCCTTTCTTTCTTACTCTTTGTG
GTATTCTTAGTCGCTCAAAAATCTCTTTTTAAAACCATTGCGATTGTTCGTCAGTTTGAT
TTGGAATTTTTCGCTACACCAAAGGATGTCTTGAACTATATAAATTCTTATGATGAAGGG
GAGCGTCAGGCTAATTTGGAACAGAGTTTTCGAATTTTATTCCAATTACACCAATATGTC
TTACCAGCCTTATATATTTTTCTTATTATCATTTCTTTCTTGACAGGAGAGATTCAGTTA
CTAGCTTTCTTGCTTGTAGGAGCCATCCATGTTTATATCAATGTGATGCAGTTACCTATG
GTAAAACGTTATTTCAAATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: EL277_RS11000 [old locus tag: SPNU_2076 ]
- symbol: EL277_RS11000
- description: DUF3169 family protein
- length: 226
- theoretical pI: 6.68056
- theoretical MW: 26379.1
- GRAVY: 0.621239
⊟Function[edit | edit source]
- TIGRFAM: Unknown function General heme biosynthesis-associated TPR protein (TIGR00540; HMM-score: 11.4)
- TheSEED: data available for D39, Hungary19A-6, TIGR4
- PFAM: no clan defined DUF3169; Protein of unknown function (DUF3169) (PF11368; HMM-score: 142.6)and 3 moreDUF846; Eukaryotic protein of unknown function (DUF846) (PF05832; HMM-score: 17.6)Tetraspannin (CL0347) DUF4064; Protein of unknown function (DUF4064) (PF13273; HMM-score: 15.4)Transporter (CL0375) SUR7; SUR7/PalI family (PF06687; HMM-score: 11.5)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 5
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.000772
- TAT(Tat/SPI): 0.000179
- LIPO(Sec/SPII): 0.001314
- predicted transmembrane helices (TMHMM): 5
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_001833114 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MGMFVGMFKARVESHEIILDVKALMPWISAICLLIGFISMFLTFNFLKKSRKFHSLYQEEMDDDLNETYYVQMYRNLEFGTIAFNITGVAIPLAIFISLSEVIILHTNPQTFFLSFLLFVVFLVAQKSLFKTIAIVRQFDLEFFATPKDVLNYINSYDEGERQANLEQSFRILFQLHQYVLPALYIFLIIISFLTGEIQLLAFLLVGAIHVYINVMQLPMVKRYFK
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1945 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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