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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 24-APR-2024
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae 6A-10
- locus tag: HKM25_RS04450
- pan locus tag?: PNEUPAN001971000
- symbol: HKM25_RS04450
- pan gene symbol?: —
- synonym:
- product: SLATT domain-containing protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: HKM25_RS04450
- symbol: HKM25_RS04450
- product: SLATT domain-containing protein
- replicon: chromosome
- strand: +
- coordinates: 880410..880973
- length: 564
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NZ_CP053210 (880410..880973) NCBI
- BioCyc:
- MicrobesOnline:
- PneumoBrowse for strain D39V:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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541ATGTCGAAAAATCAAGAAAAATTACACTTTCAACTTAAAAAATTTATAGTAAATGTAGGT
TGGACTCACAAAATTCATGCGGTTAGAATTGACGAGTTAGAAAGCTATATTCGATGGTTT
AGAATAGCAACAATAATCATTTCTGGAGTTGTCTCTTCTGGCTTAGTTGGAATACTTTGG
TTTGATGAATATTGGATAAAGCTTGTTACAGCATTTTTATCATTAGTCACGACAATAATT
TTTAGCATCACAAAGGAGTTTAACTTTGAGGAACGACTAGCTTTGGAGAGGAAATCTGTT
GATGAGCTTTGGAATCTTAGAGTGTTAGCTGAAATTCTTTTATCTGAGGTGGTTTACAAT
GGAAAACCATCCAGTGAAATCCAAGAATTTTTCGAAGAATTAAAATTTCGAAGAGATGCT
ACTTATAGTCAACTTTCTAATGCTTCTCCCAAAAATGTATCCAAGGCTTCAAAACTAATA
AAATCGAGAAAAGATAATGATTATGAGGAGGATTATAGATACTTTATTCCAAAAGAATTG
ATGGAAATTAAGGAGGAAGAGTAA60
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564
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: HKM25_RS04450
- symbol: HKM25_RS04450
- description: SLATT domain-containing protein
- length: 187
- theoretical pI: 6.30019
- theoretical MW: 22152.3
- GRAVY: -0.23369
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED:
- PFAM: SLATT (CL0676) SLATT_4; SMODS and SLOG-associating 2TM effector domain family 4 (PF18186; HMM-score: 81.8)and 1 moreDUF4231; Protein of unknown function (DUF4231) (PF14015; HMM-score: 17.9)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0.32
- Cytoplasmic Membrane Score: 9.55
- Cellwall Score: 0.12
- Extracellular Score: 0.01
- Internal Helices: 2
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.00218
- TAT(Tat/SPI): 0.000091
- LIPO(Sec/SPII): 0.001445
- predicted transmembrane helices (TMHMM): 2
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_000042158 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MSKNQEKLHFQLKKFIVNVGWTHKIHAVRIDELESYIRWFRIATIIISGVVSSGLVGILWFDEYWIKLVTAFLSLVTTIIFSITKEFNFEERLALERKSVDELWNLRVLAEILLSEVVYNGKPSSEIQEFFEELKFRRDATYSQLSNASPKNVSKASKLIKSRKDNDYEEDYRYFIPKELMEIKEEE
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V:
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.