From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 09-FEB-2021

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae 6A-10
  • locus tag: HKM25_RS05105 [old locus tag: HKM25_1044 ]
  • pan locus tag?: PNEUPAN002213000
  • symbol: HKM25_RS05105
  • pan gene symbol?: ftsW
  • synonym:
  • product: FtsW/RodA/SpoVE family cell cycle protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: HKM25_RS05105 [old locus tag: HKM25_1044 ]
  • symbol: HKM25_RS05105
  • product: FtsW/RodA/SpoVE family cell cycle protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1004239..1005468
  • length: 1230
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NZ_CP053210 (1004239..1005468) NCBI
  • BioCyc:
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_0952 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    ATGAAGATTAGTAAGAGGCACTTATTAAATTATTCCATCTTGATTCCCTACTTGCTTTTA
    TCTATTTTGGGCTTGATTGTGGTCTATTCGACCACCAGTGCTATTTTAATTGAAGAAGGC
    AAGAGTGCCTTGCAGTTGGTTCGAAACCAAGGAATCTTTTGGATTGTTAGTTTGATACTG
    ATTGCCTTAATTTATAAATTGAGACTAGATTTTTTGAGAAATGAGCGACTAATCATTTTA
    GTTATATTAATAGAAATGCTTTTATTGTTCTTGGCTCGTTTTATTGGTATTTCCGTAAAC
    GGGGCATACGGTTGGATTTCGGTTGCAGGAGTAACTATTCAGCCAGCTGAGTACTTAAAA
    ATCATTATTATTTGGTATTTAGCTCACCGATTCTCCAAACAGCAAGAAGAAATAGCTACT
    TATGATTTTCAAGTTTTGACTCAAAATCAATGGCTTCCCCGTGCTTTTAATGATTGGCGA
    TTCGTTCTCCTAGTTCTGATTGGAAGTTTGGGAATTTTCCCTGATTTAGGAAATGCGACT
    ATTTTAGTCTTGGTTTCCTTGATTATGTATACAGTTAGTGGAATCGCTTATCGCTGGTTT
    TCAACCATTCTGGCGCTCGTATCTGCCGCTTCTGTCTTTGTCTTGACCACTATCAGCCTA
    ATCGGTGTTGAGACCTTTTCAAAAATTCCAGTATTTGGCTATGTAGCCAAGCGCTTTAGT
    GCCTTTTTTAATCCTTTTGCCGATCGTGCTGATGCAGGTCACCAGTTAGCTAATTCTTAT
    TTTGCCATGGTCAATGGCGGTTGGTTTGGTCTAGGTCTTGGAAACTCGATTGAAAAACGA
    GGTTATTTGCCAGAAGCTCATACAGACTTTGTCTTTTCTATCGTGATTGAAGAATTTGGC
    TTTGTTGGTGCCAGTCTTATTTTAGCTCTCTTGTTTTTCATGATTTTGCGGATTATCTTG
    GTCGGTATCCGAGCGGAGAATCCTTTCAATGCCATGGTTGCACTCGGTGTCGGAGGGATG
    ATGTTGGTTCAGGTATTTGTCAATATCGGAGGGATTTCGGGCTTGATTCCATCTACAGGA
    GTAACCTTCCCCTTCTTATCCCAGGGTGGAAATAGTCTTCTAGTCTTATCAGTGGCAGTA
    GCCTTTGTCTTAAATATTGATGCCAGTGAAAAACGCGCTAAGTTGTACCGAGAATTGGAA
    AATCAACCAATGAACCTTCTGTTGAAGTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1230

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: HKM25_RS05105 [old locus tag: HKM25_1044 ]
  • symbol: HKM25_RS05105
  • description: FtsW/RodA/SpoVE family cell cycle protein
  • length: 409
  • theoretical pI: 9.59959
  • theoretical MW: 45434.7
  • GRAVY: 0.829095

⊟Function[edit | edit source]

  • TIGRFAM:
    Cell structure Cell envelope Biosynthesis and degradation of murein sacculus and peptidoglycan cell division protein FtsW (TIGR02614; HMM-score: 289.1)
    Cellular processes Cellular processes Cell division cell division protein FtsW (TIGR02614; HMM-score: 289.1)
    and 4 more
    Cell structure Cell envelope Biosynthesis and degradation of murein sacculus and peptidoglycan rod shape-determining protein RodA (TIGR02210; HMM-score: 221.6)
    Cellular processes Cellular processes Cell division rod shape-determining protein RodA (TIGR02210; HMM-score: 221.6)
    Cell structure Cell envelope Biosynthesis and degradation of murein sacculus and peptidoglycan stage V sporulation protein E (TIGR02615; HMM-score: 216)
    Cellular processes Cellular processes Sporulation and germination stage V sporulation protein E (TIGR02615; HMM-score: 216)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • PFAM:
    Membrane_trans (CL0142) FTSW_RODA_SPOVE; Cell cycle protein (PF01098; HMM-score: 265)
    and 1 more
    TIM_barrel (CL0036) ALAD; Delta-aminolevulinic acid dehydratase (PF00490; HMM-score: 11.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 8
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.03164
    • TAT(Tat/SPI): 0.000529
    • LIPO(Sec/SPII): 0.033166
  • predicted transmembrane helices (TMHMM): 8

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000703358 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MKISKRHLLNYSILIPYLLLSILGLIVVYSTTSAILIEEGKSALQLVRNQGIFWIVSLILIALIYKLRLDFLRNERLIILVILIEMLLLFLARFIGISVNGAYGWISVAGVTIQPAEYLKIIIIWYLAHRFSKQQEEIATYDFQVLTQNQWLPRAFNDWRFVLLVLIGSLGIFPDLGNATILVLVSLIMYTVSGIAYRWFSTILALVSAASVFVLTTISLIGVETFSKIPVFGYVAKRFSAFFNPFADRADAGHQLANSYFAMVNGGWFGLGLGNSIEKRGYLPEAHTDFVFSIVIEEFGFVGASLILALLFFMILRIILVGIRAENPFNAMVALGVGGMMLVQVFVNIGGISGLIPSTGVTFPFLSQGGNSLLVLSVAVAFVLNIDASEKRAKLYRELENQPMNLLLK

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=HKM25_RS05105&oldid=23412"