Jump to navigation
Jump to search
PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 28-AUG-2013
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae TCH8431/19A
- locus tag: HMPREF0837_10167 [new locus tag: HMPREF0837_RS00895 ]
- pan locus tag?: PNEUPAN003835000
- symbol: HMPREF0837_10167
- pan gene symbol?: manX_4
- synonym:
- product: PTS system fructose IIA component
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: HMPREF0837_10167 [new locus tag: HMPREF0837_RS00895 ]
- symbol: HMPREF0837_10167
- product: PTS system fructose IIA component
- replicon: chromosome
- strand: -
- coordinates: 165479..165910
- length: 432
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: CP001993 (165479..165910) NCBI
- BioCyc: see HMPREF0837_RS00895
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_1992 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421ATGTTTAATAGAGGAATTTTAGTTGCCAGTCATGGTAATTTTGCTAGCGGAGCTCTCATG
ACCGCAGAAATGTTTGTTGGTGAGACAACAAATGATAGAGTTAGGACATTAGGTTTGATG
CCTGGAGAGAATATTGTAGAGTTTGAACATTATTTTAAAAATCAAGTAAATGAACTGTTA
GACTCAAATCAAGAGGTTATCGTTTTGACTGACTTGATTGGAGGAAGTCCTAATAATGTG
GCTTTGTCACGGTTTTTAAATTTGGATTCAGTTGATATTGTAACAGGGTTTAATATCCCT
CTCCTAGTGGAATTAATATCAAGTTATGATTCAAAAATCAATTTAGAAGAAATTGTTCAA
AATGCTCAAAATAGTTTGTTTAATGTTAAACAACAACTTAACGTAGAGGAGGAAGAGGAT
TTATGTCTATAG60
120
180
240
300
360
420
432
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: HMPREF0837_10167 [new locus tag: HMPREF0837_RS00895 ]
- symbol: HMPREF0837_10167
- description: PTS system fructose IIA component
- length: 143
- theoretical pI: 3.93366
- theoretical MW: 15905.8
- GRAVY: 0.034965
⊟Function[edit | edit source]
- TIGRFAM: Transport and binding proteins Carbohydrates, organic alcohols, and acids PTS system, mannose/fructose/sorbose family, IIA component (TIGR00824; EC 2.7.1.69; HMM-score: 72.1)Signal transduction PTS PTS system, mannose/fructose/sorbose family, IIA component (TIGR00824; EC 2.7.1.69; HMM-score: 72.1)
- TheSEED :
- PTS system, mannose-specific IIA component
Carbohydrates Monosaccharides L-fucose utilization Predicted L-fucose-specific phosphotransferase system, EIIA componentand 2 more - PFAM: EDD (CL0245) EIIA-man; PTS system fructose IIA component (PF03610; HMM-score: 108.6)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 9.97
- Cytoplasmic Membrane Score: 0
- Cellwall Score: 0.01
- Extracellular Score: 0.02
- Internal Helices: 0
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.04561
- TAT(Tat/SPI): 0.012384
- LIPO(Sec/SPII): 0.026965
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MFNRGILVASHGNFASGALMTAEMFVGETTNDRVRTLGLMPGENIVEFEHYFKNQVNELLDSNQEVIVLTDLIGGSPNNVALSRFLNLDSVDIVTGFNIPLLVELISSYDSKINLEEIVQNAQNSLFNVKQQLNVEEEEDLCL
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- data available for TIGR4
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1992 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.